Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007471.1-P | Field mustard | nucleus | 95.95 | 95.56 |
| CDY05984 | Canola | nucleus | 95.34 | 95.15 |
| AT3G59690.2 | Thale cress | nucleus | 88.87 | 84.91 |
| CDY30433 | Canola | cytosol | 58.5 | 64.22 |
| CDY23391 | Canola | cytosol | 57.29 | 61.39 |
| CDY66694 | Canola | nucleus | 65.59 | 54.09 |
| CDX79809 | Canola | nucleus | 65.18 | 53.85 |
| KRH50198 | Soybean | cytosol | 57.69 | 53.47 |
| CDX83468 | Canola | plasma membrane | 59.31 | 53.18 |
| KRH71267 | Soybean | cytosol | 56.88 | 52.52 |
| CDY44247 | Canola | nucleus | 59.11 | 52.52 |
| Solyc08g014280.2.1 | Tomato | cytosol | 55.06 | 50.46 |
| PGSC0003DMT400041427 | Potato | cytosol | 54.25 | 50.09 |
| VIT_05s0094g00530.t01 | Wine grape | cytosol | 58.3 | 48.16 |
| GSMUA_Achr8P32220_001 | Banana | cytosol | 36.84 | 41.65 |
| GSMUA_Achr7P02870_001 | Banana | mitochondrion | 24.7 | 40.53 |
| Solyc06g053450.2.1 | Tomato | nucleus | 48.38 | 40.37 |
| PGSC0003DMT400042121 | Potato | cytosol, mitochondrion | 48.79 | 39.06 |
| Os01t0896200-01 | Rice | mitochondrion | 23.68 | 34.72 |
| EES01898 | Sorghum | cytosol | 37.04 | 32.5 |
| Zm00001d012167_P001 | Maize | cytosol | 37.04 | 31.66 |
| CDY11238 | Canola | cytosol, plastid | 24.29 | 29.06 |
| CDX80849 | Canola | cytosol, plastid | 24.7 | 28.64 |
| TraesCS3D01G392900.1 | Wheat | cytosol | 36.03 | 28.62 |
| HORVU3Hr1G089690.1 | Barley | cytosol | 36.23 | 28.5 |
| TraesCS3B01G431200.1 | Wheat | cytosol | 36.03 | 28.43 |
| TraesCS3A01G398900.1 | Wheat | cytosol | 35.83 | 28.41 |
| CDY04876 | Canola | nucleus, plastid | 24.9 | 27.64 |
| CDY55696 | Canola | nucleus, plastid | 24.29 | 27.46 |
| CDY10410 | Canola | cytosol, plastid | 24.09 | 26.8 |
| CDY17214 | Canola | cytosol, plastid | 14.37 | 26.79 |
| CDY27925 | Canola | plastid | 14.17 | 26.42 |
| CDX95328 | Canola | cytosol | 23.28 | 25.84 |
| CDY23202 | Canola | cytosol | 23.28 | 25.84 |
| CDY62768 | Canola | cytosol | 14.37 | 25.63 |
| CDX96427 | Canola | cytosol | 12.35 | 25.1 |
| CDX70333 | Canola | cytosol | 24.09 | 24.79 |
| CDY32322 | Canola | cytosol, plastid | 12.96 | 24.71 |
| CDX72935 | Canola | cytosol | 12.96 | 24.33 |
| CDY20099 | Canola | cytosol | 12.96 | 24.24 |
| CDX92933 | Canola | cytosol, plastid | 19.23 | 23.69 |
| CDY24286 | Canola | cytosol | 19.23 | 23.51 |
| CDX90011 | Canola | nucleus | 24.09 | 23.43 |
| CDY15200 | Canola | nucleus | 24.09 | 23.29 |
| CDY10618 | Canola | cytosol | 19.03 | 23.15 |
| CDY05111 | Canola | nucleus | 20.04 | 23.08 |
| CDX90766 | Canola | nucleus | 20.04 | 22.97 |
| CDY38525 | Canola | cytosol | 19.03 | 22.76 |
| CDX77034 | Canola | cytosol | 18.22 | 22.73 |
| CDY08131 | Canola | nucleus | 15.79 | 22.67 |
| CDY35313 | Canola | nucleus | 18.22 | 22.67 |
| CDY05931 | Canola | nucleus | 15.99 | 22.44 |
| CDY37387 | Canola | cytosol | 17.21 | 22.14 |
| CDX91859 | Canola | mitochondrion, nucleus | 23.48 | 21.89 |
| CDY69140 | Canola | mitochondrion, nucleus | 22.87 | 21.52 |
| CDY00196 | Canola | nucleus | 20.65 | 21.47 |
| CDX86983 | Canola | nucleus | 20.65 | 21.47 |
| CDY26241 | Canola | nucleus | 15.99 | 21.07 |
| CDY48305 | Canola | nucleus | 15.99 | 21.07 |
| CDY05917 | Canola | mitochondrion, nucleus | 20.04 | 20.84 |
| CDY08120 | Canola | mitochondrion, nucleus | 19.43 | 20.25 |
| CDY39505 | Canola | cytosol | 16.19 | 20.25 |
| CDX83237 | Canola | cytosol | 20.65 | 20.12 |
| CDY58749 | Canola | cytosol | 17.41 | 18.86 |
| CDX72934 | Canola | nucleus, plastid | 3.85 | 18.63 |
| CDX96426 | Canola | nucleus, plastid | 3.85 | 18.63 |
| CDX92931 | Canola | mitochondrion, nucleus | 9.51 | 18.43 |
| CDY41307 | Canola | cytosol | 20.24 | 18.28 |
| CDX73992 | Canola | nucleus | 17.0 | 17.61 |
| CDY07937 | Canola | nucleus | 17.0 | 17.57 |
| CDY22198 | Canola | cytosol | 19.84 | 17.53 |
| CDY05918 | Canola | mitochondrion | 10.73 | 16.88 |
| CDY24282 | Canola | mitochondrion | 9.11 | 14.75 |
Protein Annotations
| EnsemblPlants:CDX71881 | EnsemblPlantsGene:GSBRNA2T00155618001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF18 | PFAM:PF00612 |
| PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDX71881 | ProteinID:CDX71881.1 | SEG:seg | SMART:SM00015 |
| UniParc:UPI0004EDE8C4 | MapMan:20.6.2 | : | : | : | : |
Description
BnaC08g29930D
Coordinates
chrLK031795:-:992738..995792
Molecular Weight (calculated)
55778.5 Da
IEP (calculated)
11.675
GRAVY (calculated)
-0.967
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGSWFSA IKRVFTPHSK EKQLSNNQEP ERKSNNKKEK KKKSLGKKLR DGETNSFLPI FRQPSSIEKI LCEAEREHNL VFRPPTPTDR ATSAPSPHIR
101: PPSPKVSSQR YVSSPRPISP RVASPRALSP KPPSPRAASP RIVQRREYVR RQEPTLLVKK ASATKIQAAF RGYMARRSFR ALKGLVRLQR VVRGHSVKRQ
201: TMNAMKYMQL LVRVQTQVQS RRIQMLEHRA RNEKDDPKLA SSASDDWDDS VLTKEEKEAR LHRKIDAMIK RERSMAYAYS QQLWKNSPRS AQDIRTNGVP
301: LWWNWVDRQN NQTQPFRLTP TRPSPSPQAH SSNKNHSRLN NSFDVSTPNS SKSAFITPQP SRYSRGGGRA TQDSPFKDDD SLTSCPPFSA PSYMAPTVSA
401: KAKLRANSNP KERMDGTTPV STNKEKRRSS FPLGSFKWNK GSLFMSNSKG PGSSSSGAVV LEKHKTLKSV GNMSIDSTVS MPATIGKRSF NRFA
101: PPSPKVSSQR YVSSPRPISP RVASPRALSP KPPSPRAASP RIVQRREYVR RQEPTLLVKK ASATKIQAAF RGYMARRSFR ALKGLVRLQR VVRGHSVKRQ
201: TMNAMKYMQL LVRVQTQVQS RRIQMLEHRA RNEKDDPKLA SSASDDWDDS VLTKEEKEAR LHRKIDAMIK RERSMAYAYS QQLWKNSPRS AQDIRTNGVP
301: LWWNWVDRQN NQTQPFRLTP TRPSPSPQAH SSNKNHSRLN NSFDVSTPNS SKSAFITPQP SRYSRGGGRA TQDSPFKDDD SLTSCPPFSA PSYMAPTVSA
401: KAKLRANSNP KERMDGTTPV STNKEKRRSS FPLGSFKWNK GSLFMSNSKG PGSSSSGAVV LEKHKTLKSV GNMSIDSTVS MPATIGKRSF NRFA
001: MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS
101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV
201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS
301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD
401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS
501: TVSMPATIGR RAFNRFA
101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV
201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS
301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD
401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS
501: TVSMPATIGR RAFNRFA
Arabidopsis Description
IQD13IQ-domain 13 [Source:UniProtKB/TrEMBL;Acc:Q9M199]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.