CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15200	Canola	nucleus	98.62	98.04
Bra033284.1-P	Field mustard	nucleus	99.02	95.63
AT1G01110.2	Thale cress	nucleus	83.27	80.27
CDY69140	Canola	mitochondrion, nucleus	68.7	66.48
CDX91859	Canola	mitochondrion, nucleus	68.7	65.85
Solyc10g005000.2.1	Tomato	nucleus	46.06	59.39
PGSC0003DMT400029325	Potato	mitochondrion	37.6	57.53
KRH47821	Soybean	nucleus	61.02	56.78
KRH06386	Soybean	mitochondrion, nucleus	60.24	55.64
VIT_15s0048g02680.t01	Wine grape	nucleus	60.43	55.12
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.46	51.19
GSMUA_Achr1P18950_001	Banana	nucleus	46.06	51.09
GSMUA_Achr1P16160_001	Banana	nucleus	44.88	50.89
TraesCS7B01G218800.3	Wheat	nucleus	51.57	48.07
HORVU7Hr1G075720.1	Barley	plasma membrane	51.38	47.8
TraesCS7A01G317400.2	Wheat	nucleus	51.18	47.79
TraesCSU01G104800.3	Wheat	nucleus	51.18	47.71
Os08t0115200-01	Rice	cytosol	50.98	47.7
GSMUA_Achr6P02050_001	Banana	cytosol	14.37	47.1
EES14418	Sorghum	cytosol	50.59	44.77
Zm00001d049684_P002	Maize	cytosol, mitochondrion	47.83	44.67
CDY05111	Canola	nucleus	37.2	44.06
CDX90766	Canola	nucleus	37.01	43.62
CDY08131	Canola	nucleus	23.23	34.3
CDY05931	Canola	nucleus	23.03	33.24
CDY23202	Canola	cytosol	25.39	28.99
CDY11238	Canola	cytosol, plastid	23.23	28.57
CDX95328	Canola	cytosol	25.0	28.54
CDX80849	Canola	cytosol, plastid	23.82	28.4
CDY37387	Canola	cytosol	21.46	28.39
CDY24286	Canola	cytosol	22.44	28.22
CDY35313	Canola	nucleus	22.05	28.21
CDX92933	Canola	cytosol, plastid	22.05	27.93
CDX77034	Canola	cytosol	21.65	27.78
CDY10618	Canola	cytosol	22.05	27.59
CDY10410	Canola	cytosol, plastid	24.02	27.48
CDY04876	Canola	nucleus, plastid	24.02	27.42
CDY55696	Canola	nucleus, plastid	23.03	26.77
CDX96427	Canola	cytosol	12.8	26.75
CDY17214	Canola	cytosol, plastid	13.78	26.42
CDY27925	Canola	plastid	13.78	26.42
CDX72935	Canola	cytosol	13.39	25.86
CDY62768	Canola	cytosol	13.58	24.91
CDY39505	Canola	cytosol	19.29	24.81
CDX70333	Canola	cytosol	23.03	24.38
CDX71881	Canola	nucleus	23.43	24.09
CDY32322	Canola	cytosol, plastid	12.2	23.94
CDY05984	Canola	nucleus	23.23	23.84
CDY58749	Canola	cytosol	21.26	23.68
CDY30433	Canola	cytosol	20.87	23.56
CDY20099	Canola	cytosol	12.2	23.48
CDY23391	Canola	cytosol	21.26	23.43
CDY05917	Canola	mitochondrion, nucleus	21.46	22.95
CDX86983	Canola	nucleus	21.46	22.95
CDY00196	Canola	nucleus	21.46	22.95
CDY08120	Canola	mitochondrion, nucleus	20.87	22.36
CDY38525	Canola	cytosol	17.72	21.79
CDY48305	Canola	nucleus	15.75	21.33
CDY26241	Canola	nucleus	15.55	21.07
CDX92931	Canola	mitochondrion, nucleus	10.43	20.78
CDX83237	Canola	cytosol	19.68	19.72
CDX83468	Canola	plasma membrane	20.28	18.69
CDY44247	Canola	nucleus	20.28	18.53
CDX73992	Canola	nucleus	17.32	18.45
CDX79809	Canola	nucleus	21.65	18.39
CDY24282	Canola	mitochondrion	10.83	18.03
CDY66694	Canola	nucleus	21.26	18.03
CDY07937	Canola	nucleus	16.54	17.57
CDY41307	Canola	cytosol	18.9	17.55
CDY22198	Canola	cytosol	19.29	17.53
CDY05918	Canola	mitochondrion	10.63	17.2
CDX72934	Canola	nucleus, plastid	2.95	14.71
CDX96426	Canola	nucleus, plastid	2.95	14.71

Protein Annotations

EnsemblPlants:CDX90011	EnsemblPlantsGene:GSBRNA2T00150510001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF50	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	ProteinID:CDX90011	ProteinID:CDX90011.1	SEG:seg	SMART:SM00015
UniParc:UPI0004EE717C	MapMan:35.2	:	:	:	:

Description

BnaA10g00710D

Coordinates

chrLK031861:+:1245667..1248228

Molecular Weight (calculated)

57409.0 Da

IEP (calculated)

10.913

GRAVY (calculated)

-1.084

Length

508 amino acids

Sequence
(BLAST)

001: MGKKNGSSWL SAVKRAFRSP SKKERNDPHG KEIEEDEEKK REKRRWLFKK PATQDSPVKP SGVSPPPPPQ ESDNANSKTL PETAPTTPPN AGKSPSVTTS
101: ASPVAVPNVT RRIYYARENY AAVVIQTSFR GYLARRALRA LKGLVKLQAL VRGHNVRKQA KMTLRCMQAL VRVQSRVLDQ RKRLSHDGSR KSAFSDSTHC
201: GFESRYLQDI SDRQSMSREG SSVPEDWDDR PHTIDEVKAM LQRRRDTALR HEKTNLSQAF SQQARRTSGS QSAGRDHRAE LEEERPKWLD RWMATRPWDK
301: PPISRASVDQ RVSVKTVEID TSQPYSRART GSPSRSQRPS SPSRSSHHYQ PRSNFSATPS PAKSRPINIR SASPRCQKDP RDDYDRAAYS YTSNTPSLRS
401: NYTMLPNYMA NTESAKARIR SQSAPRQRPS TPERDRVGLV KKRLSFPVPP QPEYDDINSL RSPSFKSVAG SHFGALLEQQ SNYSSCCTES NGVEVSPAST
501: SDYRNWLR

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.