Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004776.1-P | Field mustard | nucleus | 98.5 | 94.24 |
| CDY66694 | Canola | nucleus | 93.31 | 93.16 |
| CDY30433 | Canola | cytosol | 57.86 | 76.89 |
| CDY23391 | Canola | cytosol | 58.03 | 75.27 |
| CDY44247 | Canola | nucleus | 67.22 | 72.3 |
| CDX83468 | Canola | plasma membrane | 65.72 | 71.32 |
| AT2G43680.1 | Thale cress | nucleus | 79.43 | 71.0 |
| CDY05984 | Canola | nucleus | 55.02 | 66.46 |
| CDX71881 | Canola | nucleus | 53.85 | 65.18 |
| KRH50198 | Soybean | cytosol | 47.16 | 52.91 |
| KRH71267 | Soybean | cytosol | 45.99 | 51.4 |
| Solyc08g014280.2.1 | Tomato | cytosol | 42.47 | 47.12 |
| PGSC0003DMT400041427 | Potato | cytosol | 41.97 | 46.92 |
| VIT_05s0094g00530.t01 | Wine grape | cytosol | 46.66 | 46.66 |
| Solyc06g053450.2.1 | Tomato | nucleus | 40.97 | 41.39 |
| PGSC0003DMT400042121 | Potato | cytosol, mitochondrion | 41.81 | 40.52 |
| GSMUA_Achr7P02870_001 | Banana | mitochondrion | 18.73 | 37.21 |
| GSMUA_Achr8P32220_001 | Banana | cytosol | 26.92 | 36.84 |
| Os01t0896200-01 | Rice | mitochondrion | 18.73 | 33.23 |
| EES01898 | Sorghum | cytosol | 30.43 | 32.33 |
| Zm00001d012167_P001 | Maize | cytosol | 29.93 | 30.97 |
| CDY11238 | Canola | cytosol, plastid | 20.9 | 30.27 |
| CDX80849 | Canola | cytosol, plastid | 21.07 | 29.58 |
| CDY04876 | Canola | nucleus, plastid | 21.24 | 28.54 |
| CDY55696 | Canola | nucleus, plastid | 20.74 | 28.38 |
| HORVU3Hr1G089690.1 | Barley | cytosol | 29.43 | 28.03 |
| TraesCS3D01G392900.1 | Wheat | cytosol | 29.1 | 27.97 |
| TraesCS3A01G398900.1 | Wheat | cytosol | 29.1 | 27.93 |
| CDY10410 | Canola | cytosol, plastid | 20.74 | 27.93 |
| TraesCS3B01G431200.1 | Wheat | cytosol | 29.1 | 27.8 |
| CDY17214 | Canola | cytosol, plastid | 11.87 | 26.79 |
| CDY27925 | Canola | plastid | 11.71 | 26.42 |
| CDX70333 | Canola | cytosol | 20.74 | 25.83 |
| CDX95328 | Canola | cytosol | 18.73 | 25.17 |
| CDY23202 | Canola | cytosol | 18.73 | 25.17 |
| CDY62768 | Canola | cytosol | 11.37 | 24.55 |
| CDY08131 | Canola | nucleus | 13.88 | 24.13 |
| CDY32322 | Canola | cytosol, plastid | 10.37 | 23.94 |
| CDY05931 | Canola | nucleus | 14.05 | 23.86 |
| CDX96427 | Canola | cytosol | 9.53 | 23.46 |
| CDY38525 | Canola | cytosol | 16.05 | 23.24 |
| CDY20099 | Canola | cytosol | 10.2 | 23.11 |
| CDX72935 | Canola | cytosol | 9.87 | 22.43 |
| CDY05111 | Canola | nucleus | 16.05 | 22.38 |
| CDX90766 | Canola | nucleus | 16.05 | 22.27 |
| CDX92933 | Canola | cytosol, plastid | 14.88 | 22.19 |
| CDY10618 | Canola | cytosol | 15.05 | 22.17 |
| CDY24286 | Canola | cytosol | 14.88 | 22.03 |
| CDY15200 | Canola | nucleus | 18.56 | 21.72 |
| CDX77034 | Canola | cytosol | 14.38 | 21.72 |
| CDY35313 | Canola | nucleus | 14.38 | 21.66 |
| CDX90011 | Canola | nucleus | 18.39 | 21.65 |
| CDX91859 | Canola | mitochondrion, nucleus | 18.9 | 21.32 |
| CDY37387 | Canola | cytosol | 13.55 | 21.09 |
| CDY69140 | Canola | mitochondrion, nucleus | 18.23 | 20.76 |
| CDX83237 | Canola | cytosol | 17.56 | 20.71 |
| CDX86983 | Canola | nucleus | 16.39 | 20.63 |
| CDY26241 | Canola | nucleus | 12.71 | 20.27 |
| CDY48305 | Canola | nucleus | 12.71 | 20.27 |
| CDY39505 | Canola | cytosol | 13.38 | 20.25 |
| CDY00196 | Canola | nucleus | 16.05 | 20.21 |
| CDY05917 | Canola | mitochondrion, nucleus | 15.89 | 20.0 |
| CDY08120 | Canola | mitochondrion, nucleus | 15.38 | 19.41 |
| CDY58749 | Canola | cytosol | 14.05 | 18.42 |
| CDY41307 | Canola | cytosol | 16.39 | 17.92 |
| CDY22198 | Canola | cytosol | 16.72 | 17.89 |
| CDX73992 | Canola | nucleus | 14.21 | 17.82 |
| CDX96426 | Canola | nucleus, plastid | 3.01 | 17.65 |
| CDX72934 | Canola | nucleus, plastid | 3.01 | 17.65 |
| CDY07937 | Canola | nucleus | 13.71 | 17.15 |
| CDX92931 | Canola | mitochondrion, nucleus | 6.86 | 16.08 |
| CDY05918 | Canola | mitochondrion | 8.36 | 15.92 |
| CDY24282 | Canola | mitochondrion | 7.02 | 13.77 |
Protein Annotations
| EnsemblPlants:CDX79809 | EnsemblPlantsGene:GSBRNA2T00132641001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF18 |
| PFAM:PF00612 | PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDX79809 | ProteinID:CDX79809.1 | SEG:seg |
| SMART:SM00015 | UniParc:UPI0004EE6138 | MapMan:20.6.2 | : | : | : |
Description
BnaA05g03470D
Coordinates
chrLK031819:-:235533..239291
Molecular Weight (calculated)
66118.8 Da
IEP (calculated)
12.063
GRAVY (calculated)
-0.964
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGSWFSA IKRVFTPHSK EKLGNEAERK NVKEKRKKGF GKLRRGEPSS IEKIFGEAER DHNLFFRPST PPPDPDRSNP PSFSPPPPLR PASPQLPSPR
101: VASPRAARAD LPRSLSPKPS EPSSASASAP PPPLKPASTR VPSQRINPPI LPSPRPTSPR VVSPQAVPQK LPSPRADPLR LNNPRPISPK PPSPRADPPR
201: PTTPRPPSPR AEPPRLDAAR PITPRPPSPR PVSPRPVQRR EIVSRPEPTL LVQHASARKI QAAFRGYMAR RSFRALKGLV RLQGVVRGHS VKRQTVNAMK
301: YMQQLVRVQS QIQSRRIKTL ENKAQAERDE AKWAAASEAG NGNWDDSVLT KEERDARSQR KTDAVIKRER SMAYAYSHKL WKNSPKSAAS TGGLPLWWNW
401: MDRQLPLASP APSHRDYRLT PTRLSPSPLS HHFRHDSNFD TSTPKSSRST LLTPSRPIRT GTSRYSRGRG QDSPFTDNDS LTSCPPLPSY MAPTVSARAK
501: VRPSSNPKER VMGTPSSVGS ERRRMSYPPT QQGMDTFRWN KGSLVMSNSG SQRGGGGPGS PGGVVLEKHK TLKSVGNLSI GSSNVSMPDG RKRFNRYV
101: VASPRAARAD LPRSLSPKPS EPSSASASAP PPPLKPASTR VPSQRINPPI LPSPRPTSPR VVSPQAVPQK LPSPRADPLR LNNPRPISPK PPSPRADPPR
201: PTTPRPPSPR AEPPRLDAAR PITPRPPSPR PVSPRPVQRR EIVSRPEPTL LVQHASARKI QAAFRGYMAR RSFRALKGLV RLQGVVRGHS VKRQTVNAMK
301: YMQQLVRVQS QIQSRRIKTL ENKAQAERDE AKWAAASEAG NGNWDDSVLT KEERDARSQR KTDAVIKRER SMAYAYSHKL WKNSPKSAAS TGGLPLWWNW
401: MDRQLPLASP APSHRDYRLT PTRLSPSPLS HHFRHDSNFD TSTPKSSRST LLTPSRPIRT GTSRYSRGRG QDSPFTDNDS LTSCPPLPSY MAPTVSARAK
501: VRPSSNPKER VMGTPSSVGS ERRRMSYPPT QQGMDTFRWN KGSLVMSNSG SQRGGGGPGS PGGVVLEKHK TLKSVGNLSI GSSNVSMPDG RKRFNRYV
001: MVKKGSWFSA IKRVFTPHSK EKLANEPERK SGKEKKKKGF GKLRHGETNS FLPIFREPSS IEKILGEAER DHNLVFRPPT PDRPNPYSAS PPPRPASPRV
101: ASPRPTSPRV ASPRVPSPRA EVPRTLSPKP PSPRAEVPRS LSPKPPSPRA DLPRSLSPKP FDRSKPSSAS ANAPPTLRPA STRVPSQRIT PHSVPSPRPS
201: SPRGASPQAI SSKPPSPRAE PPTLDTPRPP SPRAASLRAD PPRLDAARPT TPRPPSPLAD APRLDAPRPT TPKPPSPRSD PPRLDAPRPT TPKPPSPRSV
301: SPRAVQRREI VYRPEPTLPV QHASATKIQG AFRGYMARKS FRALKGLVRL QGVVRGYSVK RQTINAMKYM QQVVRVQSQI QSRRIKMLEN QAQVEKDEAK
401: WAASEAGNDN WDDSVLTKEE RDSRSQRKTD AIIKRERSMA YAYSRKLWKN SPKSTQDNRS FPQWWNWVDR QNPLASPAPS YSQPQRDFRL TPSRLCPSPL
501: SQSSKQHHIR LDNHFDTSTP RSSRSTFHTP SRPIHTGTSR YSRGRLRGQD SPFKDDDSLT SCPPFPSYMA PTVSAKAKVR PNSNPKERVM GTPVSEKRRM
601: SYPPTQDTFR WNKGSLVMSN SSSHRGPGSP GGVVLEKHKT LKSVGNLSIG STASMATTVG RKEFNRFV
101: ASPRPTSPRV ASPRVPSPRA EVPRTLSPKP PSPRAEVPRS LSPKPPSPRA DLPRSLSPKP FDRSKPSSAS ANAPPTLRPA STRVPSQRIT PHSVPSPRPS
201: SPRGASPQAI SSKPPSPRAE PPTLDTPRPP SPRAASLRAD PPRLDAARPT TPRPPSPLAD APRLDAPRPT TPKPPSPRSD PPRLDAPRPT TPKPPSPRSV
301: SPRAVQRREI VYRPEPTLPV QHASATKIQG AFRGYMARKS FRALKGLVRL QGVVRGYSVK RQTINAMKYM QQVVRVQSQI QSRRIKMLEN QAQVEKDEAK
401: WAASEAGNDN WDDSVLTKEE RDSRSQRKTD AIIKRERSMA YAYSRKLWKN SPKSTQDNRS FPQWWNWVDR QNPLASPAPS YSQPQRDFRL TPSRLCPSPL
501: SQSSKQHHIR LDNHFDTSTP RSSRSTFHTP SRPIHTGTSR YSRGRLRGQD SPFKDDDSLT SCPPFPSYMA PTVSAKAKVR PNSNPKERVM GTPVSEKRRM
601: SYPPTQDTFR WNKGSLVMSN SSSHRGPGSP GGVVLEKHKT LKSVGNLSIG STASMATTVG RKEFNRFV
Arabidopsis Description
IQD14IQD14 [Source:UniProtKB/TrEMBL;Acc:A0A178VRE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.