CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92931	Canola	mitochondrion, nucleus	59.67	71.37
CDX92933	Canola	cytosol, plastid	66.56	50.62
CDY24286	Canola	cytosol	66.89	50.49
Bra001855.1-P	Field mustard	cytosol	53.11	47.23
CDY10618	Canola	cytosol	59.67	44.83
AT3G22190.2	Thale cress	cytosol	61.97	44.79
CDY37387	Canola	cytosol	53.11	42.19
CDY39505	Canola	cytosol	51.15	39.49
CDY58749	Canola	cytosol	55.41	37.06
VIT_06s0009g00210.t01	Wine grape	cytosol	46.23	31.69
KRH26707	Soybean	cytosol	40.98	29.62
KRH22612	Soybean	cytosol	40.66	29.18
Solyc11g071840.1.1	Tomato	cytosol	42.62	29.02
KRH39086	Soybean	cytosol	39.67	27.88
Os03t0787200-01	Rice	cytosol	38.36	27.73
GSMUA_Achr4P31410_001	Banana	cytosol	39.02	27.05
GSMUA_Achr5P02600_001	Banana	cytosol	38.69	26.88
TraesCS5A01G425800.1	Wheat	cytosol, mitochondrion	37.38	26.51
TraesCS5B01G427800.1	Wheat	cytosol, mitochondrion	37.05	26.28
GSMUA_Achr4P22800_001	Banana	cytosol	37.38	26.27
EER90769	Sorghum	mitochondrion	37.7	26.14
Zm00001d034366_P003	Maize	mitochondrion	36.72	25.06
Os12t0619000-01	Rice	cytosol	36.07	24.89
TraesCSU01G076200.1	Wheat	cytosol, mitochondrion	35.08	24.88
TraesCS5D01G037300.2	Wheat	nucleus	33.44	23.72
HORVU5Hr1G007780.1	Barley	cytosol	33.11	23.54
TraesCS5A01G029600.3	Wheat	nucleus	33.11	23.27
Zm00001d013112_P011	Maize	mitochondrion	38.03	23.02
Os03t0648300-01	Rice	cytosol	33.11	22.95
KXG24027	Sorghum	cytosol	32.79	22.73
TraesCS5B01G028200.1	Wheat	nucleus	32.79	22.57
EER91163	Sorghum	cytosol	30.82	22.27
TraesCS5B01G375000.1	Wheat	nucleus	31.8	22.25
TraesCS5D01G382500.1	Wheat	nucleus	31.8	22.15
TraesCS5A01G373000.1	Wheat	nucleus	31.15	21.79
HORVU5Hr1G092660.2	Barley	nucleus	30.82	21.46
Zm00001d033211_P002	Maize	cytosol	29.84	21.21
Zm00001d031098_P004	Maize	cytosol	33.11	20.0
CDY17214	Canola	cytosol, plastid	17.05	19.62
CDY27925	Canola	plastid	17.05	19.62
CDY32322	Canola	cytosol, plastid	15.74	18.53
CDY20099	Canola	cytosol	15.74	18.18
CDY62768	Canola	cytosol	15.74	17.33
CDY11238	Canola	cytosol, plastid	21.64	15.98
CDX77034	Canola	cytosol	20.66	15.91
CDX80849	Canola	cytosol, plastid	21.97	15.73
CDY35313	Canola	nucleus	20.33	15.62
CDY55696	Canola	nucleus, plastid	21.97	15.33
CDY04876	Canola	nucleus, plastid	21.97	15.06
CDY10410	Canola	cytosol, plastid	21.64	14.86
CDY05918	Canola	mitochondrion	15.08	14.65
CDX70333	Canola	cytosol	21.31	13.54
CDX95328	Canola	cytosol	19.34	13.26
CDX96427	Canola	cytosol	10.49	13.17
CDY23202	Canola	cytosol	19.02	13.03
CDX72935	Canola	cytosol	11.15	12.93
CDY38525	Canola	cytosol	16.72	12.35
CDY48305	Canola	nucleus	14.43	11.73
CDY26241	Canola	nucleus	14.43	11.73
CDY41307	Canola	cytosol	20.66	11.52
CDY22198	Canola	cytosol	20.0	10.91
CDX90011	Canola	nucleus	18.03	10.83
CDY15200	Canola	nucleus	18.03	10.76
CDX83237	Canola	cytosol	17.38	10.45
CDX90766	Canola	nucleus	14.1	9.98
CDY08120	Canola	mitochondrion, nucleus	15.41	9.92
CDY05111	Canola	nucleus	13.77	9.79
CDY05917	Canola	mitochondrion, nucleus	15.08	9.68
CDX73992	Canola	nucleus	15.08	9.64
CDY05984	Canola	nucleus	15.41	9.49
CDX86983	Canola	nucleus	14.75	9.47
CDY30433	Canola	cytosol	13.77	9.33
CDY00196	Canola	nucleus	14.43	9.26
CDX71881	Canola	nucleus	14.75	9.11
CDY07937	Canola	nucleus	14.1	9.0
CDX91859	Canola	mitochondrion, nucleus	15.41	8.87
CDX72934	Canola	nucleus, plastid	2.95	8.82
CDX96426	Canola	nucleus, plastid	2.95	8.82
CDY23391	Canola	cytosol	13.11	8.68
CDY69140	Canola	mitochondrion, nucleus	14.75	8.57
CDY05931	Canola	nucleus	8.52	7.39
CDY08131	Canola	nucleus	8.2	7.27
CDX83468	Canola	plasma membrane	12.79	7.08
CDX79809	Canola	nucleus	13.77	7.02
CDY66694	Canola	nucleus	13.11	6.68
CDY44247	Canola	nucleus	11.8	6.47

Protein Annotations

EnsemblPlants:CDY24282	EnsemblPlantsGene:GSBRNA2T00026449001	PANTHER:PTHR32295	PANTHER:PTHR32295:SF12	ProteinID:CDY24282	ProteinID:CDY24282.1
SEG:seg	UniParc:UPI0004EF11EB	UniProt:A0A078GGI7	MapMan:35.2	:	:

Description

BnaC03g42550DBnaC03g42550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGI7]

Coordinates

chrLK032156:-:297590..299275

Molecular Weight (calculated)

34293.6 Da

IEP (calculated)

10.074

GRAVY (calculated)

-0.657

Length

305 amino acids

Sequence
(BLAST)

001: MLKSSKMDLK ARARARRVRL SLECETGQQT LQQQVANEAR VREIEEGWCD SNGSVEKIQA KLVKRQEAAA KRERAMAYAL THQWQAGTRQ LSAHSEFQPD
101: KNNWGWNWLE RWMAVRPWEN RFLDTRCQTL QLLYPSGKAA GPSLSDNDSS SPGSIPVVSK ARSKLAKDDL AVEVNSRRPG AAPRSHSSPK ERLSLPNTGK
201: SLGYPSAKVI RAGKLTETSA QNQRRRNSEP IKQRLALPCL SLCESSAQIP LPSFMYIYTA SGTQSWENRT QWVSDLRELL LYIDQEENTC GIGVFPSSLL
301: SVIYS

Best Arabidopsis Sequence Match ( AT3G22190.1 )
(BLAST)

001: MGASGRWIKA LVGFTKSDKS RSSKKDENVK VATKSRFGRK NSVDFDFEKF QDGFEDSNTR SMVDTGVSTS TSLQSYGGVA YDEQSRENRA ATRIQTAYRG
101: FLARRALRAL KGLVRLQALV RGHAVRKQAA VTLRCMQALV RVQARVRARR VRLALELESE TSQQTLQQQL ADEARVREIE EGWCDSIGSV EQIQAKLLKR
201: QEAAAKRERA MAYALTHQWQ AGTRLLSAHS GFQPDKNNWG WNWLERWMAV RPWENRFLDS NLRDDAKLGE NGMEQSENVP KTQIKSVSKM PNTSNLVSGV
301: SSQMTGPCQS DGDSSSPGIS SSIPVVSKAK SKPAKDDLAV EVNSRPGAGP RSHSNPKERS REPNRSSKER LSLPNSGKSL GSQSTKANRA GKLTPASQKV
401: VEEKSAQNQR RRNSDPIKQR LA

Arabidopsis Description

IQD5IQD5 [Source:UniProtKB/TrEMBL;Acc:A0A178VHN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.