Factsheet for TraesCS5B01G028200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G007780.1	Barley	cytosol	90.29	93.24
TraesCS5D01G037300.2	Wheat	nucleus	90.29	93.02
TraesCS5A01G029600.3	Wheat	nucleus	90.97	92.86
Os12t0619000-01	Rice	cytosol	70.2	70.36
KXG24027	Sorghum	cytosol	63.88	64.32
TraesCS5B01G375000.1	Wheat	nucleus	54.4	55.28
Zm00001d031098_P004	Maize	cytosol	62.75	55.05
GSMUA_Achr4P31410_001	Banana	cytosol	45.82	46.14
CDY37387	Canola	cytosol	39.73	45.83
Bra031331.1-P	Field mustard	cytosol	39.73	45.83
GSMUA_Achr5P02600_001	Banana	cytosol	44.7	45.1
CDY24286	Canola	cytosol	41.08	45.05
CDX92933	Canola	cytosol, plastid	40.63	44.89
GSMUA_Achr4P22800_001	Banana	cytosol	43.57	44.47
KRH22612	Soybean	cytosol	42.44	44.24
KRH26707	Soybean	cytosol	41.99	44.08
CDY10618	Canola	cytosol	40.18	43.84
VIT_06s0009g00210.t01	Wine grape	cytosol	43.57	43.37
AT3G22190.2	Thale cress	cytosol	41.08	43.13
Solyc11g071840.1.1	Tomato	cytosol	42.21	41.74
KRH39086	Soybean	cytosol	40.63	41.47
TraesCS5B01G427800.1	Wheat	cytosol, mitochondrion	39.5	40.7
Bra001855.1-P	Field mustard	cytosol	31.38	40.52
CDY39505	Canola	cytosol	36.12	40.51
CDX92931	Canola	mitochondrion, nucleus	22.12	38.43
CDY58749	Canola	cytosol	39.28	38.16
Bra023846.1-P	Field mustard	cytosol	35.44	37.65
CDY24282	Canola	mitochondrion	22.57	32.79
TraesCS3B01G124000.1	Wheat	cytosol	28.44	29.03
TraesCS7B01G010100.1	Wheat	nucleus	19.41	26.3
TraesCS3B01G280900.1	Wheat	cytosol	24.15	24.88
TraesCS1B01G379600.1	Wheat	mitochondrion	22.57	24.04
TraesCS1B01G082100.1	Wheat	cytosol	24.38	22.5
TraesCS3B01G385100.1	Wheat	cytosol	24.83	22.04
TraesCS3B01G603500.1	Wheat	cytosol, mitochondrion	23.48	19.77
TraesCS7B01G218800.3	Wheat	nucleus	22.57	18.35
TraesCS1B01G297500.1	Wheat	cytosol	18.06	15.15
TraesCS3B01G431200.1	Wheat	cytosol	19.41	13.74

Protein Annotations

EnsemblPlants:TraesCS5B01G028200.1	EnsemblPlantsGene:TraesCS5B01G028200	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	PANTHER:PTHR32295	PANTHER:PTHR32295:SF23	PFAM:PF00612
PFscan:PS50096	SEG:seg	SMART:SM00015	SUPFAM:SSF52540	MapMan:35.2	:

Description

No Description!

Coordinates

chr5B:+:27293772..27299819

Molecular Weight (calculated)

47700.8 Da

IEP (calculated)

10.782

GRAVY (calculated)

-0.953

Length

443 amino acids

Sequence
(BLAST)

001: MGISSKWIKS LVGIKKHGKA QNGESSRERS SAAQVLHKRK HSVDTEGALA VAERTVQTEP LASDTNTQTI SSETELNTKE HQAAIVIQSA FRAFLARRAL
101: RALKGLVRLQ ALVRGHAVRK QAAETLQCMQ SLVKAQARVR ARQVCIGLEG QVPQKKAPEK NAQEDQAREI EERWCGGIGS AEDMQAKVLK KQEAAAKRER
201: AMAYALTHQR QAGSRKQKAA DVQGPEADEN QWGRNWVERW VAVRPWENRL LDSNAKENVP FGDDKEADEN GDRDVNKPKG KVAVSGILSN GSSQTKDAKH
301: KKSHSDASGS SSGQSAAVPP TASLGSSKLK PKPSDQTSEE VSPQPKPSDQ TSEEVSPQPT DPAPRSTSNP KERPAQVNAP TRKRLSLPNN ATASGGARKG
401: QASSSEKTRS VGSKNTAKGA SKSEPKQRPS PGSATAKRVQ AQA

Best Arabidopsis Sequence Match ( AT3G22190.1 )
(BLAST)

001: MGASGRWIKA LVGFTKSDKS RSSKKDENVK VATKSRFGRK NSVDFDFEKF QDGFEDSNTR SMVDTGVSTS TSLQSYGGVA YDEQSRENRA ATRIQTAYRG
101: FLARRALRAL KGLVRLQALV RGHAVRKQAA VTLRCMQALV RVQARVRARR VRLALELESE TSQQTLQQQL ADEARVREIE EGWCDSIGSV EQIQAKLLKR
201: QEAAAKRERA MAYALTHQWQ AGTRLLSAHS GFQPDKNNWG WNWLERWMAV RPWENRFLDS NLRDDAKLGE NGMEQSENVP KTQIKSVSKM PNTSNLVSGV
301: SSQMTGPCQS DGDSSSPGIS SSIPVVSKAK SKPAKDDLAV EVNSRPGAGP RSHSNPKERS REPNRSSKER LSLPNSGKSL GSQSTKANRA GKLTPASQKV
401: VEEKSAQNQR RRNSDPIKQR LA

Arabidopsis Description

IQD5IQD5 [Source:UniProtKB/TrEMBL;Acc:A0A178VHN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.