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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03040.1 TraesCS6A01G274500.1 AT3G27960.1 21798944
AT5G03040.1 TraesCS6B01G302000.1 AT3G27960.1 21798944
AT5G03040.1 TraesCS6D01G254800.1 AT3G27960.1 21798944
AT5G03040.1 TraesCS4A01G206200.2 AT4G09570.1 19130088
AT5G03040.1 TraesCS4B01G109800.2 AT4G09570.1 19130088
AT5G03040.1 TraesCS4D01G107200.1 AT4G09570.1 19130088
AT5G03040.1 TraesCS5A01G107900.1 AT4G09570.1 19130088
AT5G03040.1 TraesCS5B01G115400.1 AT4G09570.1 19130088
AT5G03040.1 TraesCS5D01G122800.1 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G287100.2 Wheat cytosol 91.86 91.68
TraesCS1A01G288100.2 Wheat nucleus 89.77 90.98
HORVU1Hr1G071700.1 Barley nucleus 80.68 82.88
Os05t0463300-00 Rice plasma membrane 48.86 51.39
OQU78148 Sorghum cytosol 46.02 43.39
TraesCS3B01G385100.1 Wheat cytosol 38.64 40.88
Zm00001d038395_P005 Maize cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 46.02 37.38
PGSC0003DMT400004433 Potato cytosol 31.63 34.79
VIT_08s0040g02360.t01 Wine grape nucleus 31.44 34.66
GSMUA_AchrUn_... Banana mitochondrion, nucleus 30.11 34.64
Solyc09g007410.2.1 Tomato cytosol 31.25 34.16
KRG95941 Soybean nucleus 30.49 33.75
KRH19825 Soybean cytosol 29.92 33.62
Solyc10g084280.1.1 Tomato nucleus 30.3 33.47
CDY11238 Canola cytosol, plastid 26.14 33.41
KRH67648 Soybean nucleus 30.11 33.33
PGSC0003DMT400027139 Potato cytosol 30.3 33.26
KRH32420 Soybean cytosol 29.73 33.12
PGSC0003DMT400045333 Potato cytosol 29.55 33.12
GSMUA_Achr7P22680_001 Banana cytosol 28.98 32.9
TraesCS1B01G082100.1 Wheat cytosol 29.73 32.71
GSMUA_Achr10P... Banana cytosol 25.95 32.46
Solyc10g086060.1.1 Tomato cytosol 28.6 32.06
CDX80849 Canola cytosol, plastid 25.76 31.92
CDY10410 Canola cytosol, plastid 26.7 31.76
CDY04876 Canola nucleus, plastid 26.52 31.46
CDY55696 Canola nucleus, plastid 25.76 31.12
Bra028854.1-P Field mustard nucleus, plastid 26.14 31.01
AT5G03040.1 Thale cress cytosol, plastid 26.89 30.8
GSMUA_Achr11P... Banana mitochondrion 25.76 29.44
CDX70333 Canola cytosol 25.95 28.54
Bra009554.1-P Field mustard cytosol 25.38 28.45
TraesCS3B01G603500.1 Wheat cytosol, mitochondrion 26.89 27.0
AT3G09710.2 Thale cress nucleus 22.73 25.64
Bra034081.1-P Field mustard nucleus 20.45 24.32
TraesCS3B01G280900.1 Wheat cytosol 18.56 22.79
TraesCS7B01G218800.3 Wheat nucleus 22.92 22.2
TraesCS7B01G010100.1 Wheat nucleus 13.64 22.02
TraesCS1B01G379600.1 Wheat mitochondrion 17.23 21.88
Bra001299.1-P Field mustard nucleus 19.51 21.78
CDX73992 Canola nucleus 19.51 21.59
TraesCS3B01G124000.1 Wheat cytosol 17.61 21.43
CDY07937 Canola nucleus 18.75 20.71
CDY22198 Canola cytosol 21.59 20.39
TraesCS5B01G427800.1 Wheat cytosol, mitochondrion 16.29 20.0
CDY41307 Canola cytosol 20.45 19.74
TraesCS5B01G028200.1 Wheat nucleus 15.15 18.06
TraesCS5B01G375000.1 Wheat nucleus 14.39 17.43
TraesCS3B01G431200.1 Wheat cytosol 19.89 16.77
Protein Annotations
EnsemblPlants:TraesCS1B01G297500.1EnsemblPlantsGene:TraesCS1B01G297500GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BSPANTHER:PTHR32295PANTHER:PTHR32295:SF6PFAM:PF00612PFscan:PS50096SEG:seg
SMART:SM00015MapMan:35.1::::
Description
No Description!
Coordinates
chr1B:-:517901894..517904410
Molecular Weight (calculated)
56594.6 Da
IEP (calculated)
11.299
GRAVY (calculated)
-0.863
Length
528 amino acids
Sequence
(BLAST)
001: MGKKVRWFDA VQRILSSSEP DREEKEGKQP AERPTSKSSF KKLWQFGKSS TSTSSSSATP ETAPAAQQQP PPQPDQQDAV EAKSAGTTSE QNDGGLRAAA
101: LAAPVAAQQP AEATAVVTPR APARSKEELA VVRIQTACRG YLVRKGYKAR AQARLMSLLE GVAVKRQTED ALYSMQMMTR VQTQIYARRV NKDKALKSQA
201: QPKQGPDKTK IGEGWDHTHQ SKEQIEATLA TKQEAASRRQ RALSYALSHQ WRNRSPSSSS SSGRGRVTPT LSHPPTFMDP GCPNWGWSLA ERCMAASRPW
301: ESQTAPPDVK DRAAPAKSVG RAASPRVSIS VQIPTTPTGR SARPAGRSSP STPTQSRSPS ALGKTVASPR RAPSPKGSPF KGSGSMLSER PRSSQEHLGT
401: SGVGGGEDKE ASLRRTTSLR SGELPGRLSP RAREVDAGET GGAPVTPSYM QATKSVKAKA RCASPAAADK AELPERATLV SSPSMKRRPS LEFAEKQGVS
501: SPRTPRTPTT PSKAKAEIRT KRSPSPRL
Best Arabidopsis Sequence Match ( AT3G52290.1 )
(BLAST)
001: MGKSWFSAVK KALSPEPKQK KEQKPHKSKK WFGKSKKLDV TNSGAAYSPR TVKDAKLKEI EEQQSRHAYS VAIATAAAAE AAVAAAQAAA EVVRLSALSR
101: FPGKSMEEIA AIKIQTAFRG YMARRALRAL RGLVRLKSLV QGKCVRRQAT STLQSMQTLA RVQYQIRERR LRLSEDKQAL TRQLQQKHNK DFDKTGENWN
201: DSTLSREKVE ANMLNKQVAT MRREKALAYA FSHQNTWKNS TKMGSQTFMD PNNPHWGWSW LERWMAARPN ENHSLTPDNA EKDSSARSVA SRAMSEMIPR
301: GKNLSPRGKT PNSRRGSSPR VRQVPSEDSN SIVSFQSEQP CNRRHSTCGS IPSTRDDESF TSSFSQSVPG YMAPTQAAKA RARFSNLSPL SSEKTAKKRL
401: SFSGSPKTVR RFSGPPKLES NVTKKDTNLA
Arabidopsis Description
IQD3IQD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.