Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g086840.2.1 | |
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03040.1 | Solyc02g086840.2.1 | AT3G27960.1 | 21798944 |
| AT5G03040.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT5G03040.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045333 | Potato | cytosol | 96.18 | 96.18 |
| Solyc09g007410.2.1 | Tomato | cytosol | 77.49 | 75.57 |
| Solyc10g084280.1.1 | Tomato | nucleus | 74.73 | 73.64 |
| VIT_08s0040g02360.t01 | Wine grape | nucleus | 61.36 | 60.33 |
| KRG95941 | Soybean | nucleus | 59.02 | 58.28 |
| KRH67648 | Soybean | nucleus | 58.39 | 57.65 |
| KRH32420 | Soybean | cytosol | 55.84 | 55.49 |
| KRH19825 | Soybean | cytosol | 54.99 | 55.11 |
| Solyc04g050050.2.1 | Tomato | cytosol | 45.86 | 54.82 |
| GSMUA_Achr10P... | Banana | nucleus | 52.23 | 54.67 |
| CDY11238 | Canola | cytosol, plastid | 46.71 | 53.27 |
| GSMUA_Achr3P17820_001 | Banana | cytosol | 53.5 | 52.72 |
| CDX80849 | Canola | cytosol, plastid | 46.92 | 51.88 |
| Os05t0123200-01 | Rice | plasma membrane | 51.59 | 51.27 |
| TraesCS1D01G064700.1 | Wheat | cytosol | 50.96 | 50.21 |
| TraesCS1B01G082100.1 | Wheat | cytosol | 50.74 | 49.79 |
| TraesCS1A01G064100.1 | Wheat | cytosol | 50.74 | 49.79 |
| KXG21175 | Sorghum | cytosol | 49.89 | 49.68 |
| CDY04876 | Canola | nucleus, plastid | 46.92 | 49.66 |
| HORVU1Hr1G013210.1 | Barley | cytosol | 50.96 | 49.59 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 48.41 | 49.46 |
| CDY55696 | Canola | nucleus, plastid | 45.86 | 49.43 |
| Zm00001d035492_P009 | Maize | cytosol | 49.89 | 49.37 |
| CDY10410 | Canola | cytosol, plastid | 46.5 | 49.32 |
| Bra028854.1-P | Field mustard | nucleus, plastid | 46.5 | 49.21 |
| GSMUA_Achr7P22680_001 | Banana | cytosol | 48.41 | 49.03 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 47.77 | 49.02 |
| Zm00001d010975_P003 | Maize | cytosol | 49.26 | 48.54 |
| GSMUA_Achr10P... | Banana | cytosol | 41.83 | 46.68 |
| GSMUA_Achr7P18240_001 | Banana | cytosol | 46.07 | 45.97 |
| HORVU3Hr1G087500.2 | Barley | cytosol | 47.98 | 45.29 |
| TraesCS3D01G346500.1 | Wheat | cytosol | 47.77 | 45.09 |
| TraesCS3B01G385100.1 | Wheat | cytosol | 47.77 | 45.09 |
| TraesCS3A01G352500.1 | Wheat | cytosol | 47.77 | 45.09 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.16 | 45.02 |
| Os01t0833800-01 | Rice | plasma membrane | 47.77 | 45.0 |
| Bra009554.1-P | Field mustard | cytosol | 44.59 | 44.59 |
| CDX70333 | Canola | cytosol | 45.44 | 44.58 |
| KXG33651 | Sorghum | cytosol | 46.92 | 44.38 |
| TraesCS3D01G543500.1 | Wheat | cytosol | 46.71 | 44.35 |
| Zm00001d042973_P007 | Maize | cytosol | 47.56 | 44.18 |
| AT3G09710.2 | Thale cress | nucleus | 43.74 | 44.02 |
| TraesCS3B01G603500.1 | Wheat | cytosol, mitochondrion | 46.5 | 41.63 |
| Bra034081.1-P | Field mustard | nucleus | 39.07 | 41.44 |
| TraesCS3A01G538100.1 | Wheat | cytosol, mitochondrion | 46.07 | 40.87 |
| HORVU3Hr1G117830.2 | Barley | endoplasmic reticulum, extracellular | 47.77 | 38.53 |
| Bra001299.1-P | Field mustard | nucleus | 35.46 | 35.31 |
| CDX73992 | Canola | nucleus | 35.03 | 34.59 |
| CDY41307 | Canola | cytosol | 39.28 | 33.82 |
| CDY22198 | Canola | cytosol | 39.92 | 33.63 |
| CDY07937 | Canola | nucleus | 33.76 | 33.26 |
| Solyc08g062940.2.1 | Tomato | cytosol | 19.96 | 30.42 |
| TraesCS1D01G287100.2 | Wheat | cytosol | 33.12 | 29.49 |
| HORVU1Hr1G071700.1 | Barley | nucleus | 32.06 | 29.38 |
| TraesCS1A01G288100.2 | Wheat | nucleus | 32.27 | 29.17 |
| Solyc03g083100.2.1 | Tomato | nucleus | 28.87 | 29.0 |
| Os05t0463300-00 | Rice | plasma membrane | 30.57 | 28.69 |
| TraesCS1B01G297500.1 | Wheat | cytosol | 32.06 | 28.6 |
| Solyc12g014130.1.1 | Tomato | nucleus | 15.71 | 28.35 |
| Solyc10g008790.2.1 | Tomato | cytosol | 18.26 | 28.29 |
| Solyc02g077260.2.1 | Tomato | nucleus | 18.05 | 28.15 |
| Solyc06g052010.1.1 | Tomato | cytosol | 23.35 | 27.71 |
| Solyc10g005000.2.1 | Tomato | nucleus | 22.93 | 27.41 |
| Solyc08g014280.2.1 | Tomato | cytosol | 31.0 | 27.09 |
| OQU78148 | Sorghum | cytosol | 32.06 | 26.96 |
| Solyc11g071840.1.1 | Tomato | cytosol | 24.84 | 26.12 |
| Solyc08g083240.2.1 | Tomato | nucleus | 24.63 | 23.72 |
| Solyc03g121760.2.1 | Tomato | cytosol | 20.81 | 22.84 |
| Zm00001d038395_P005 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.0 | 22.46 |
| Solyc06g053450.2.1 | Tomato | nucleus | 26.75 | 21.28 |
| Solyc01g009340.2.1 | Tomato | nucleus | 16.14 | 18.86 |
Protein Annotations
| EnsemblPlants:Solyc10g086060.1.1 | EnsemblPlantsGene:Solyc10g086060.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF28 | PFAM:PF00612 | PFscan:PS50096 |
| SEG:seg | SMART:SM00015 | UniParc:UPI0002769351 | UniProt:K4D440 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr10:-:65024279..65026420
Molecular Weight (calculated)
52291.7 Da
IEP (calculated)
10.530
GRAVY (calculated)
-0.843
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKGNWFSS VKKALSPDPK KSKKKWYGKE KDPVPDSFSP VAASVSPPHP VPHVEEVALD EVEEELTKHA YSVAASTSAA AEVDVSATEA AEEVVWLDKV
101: TQYTGKSKEE VAAIKIQTAF RGYLARRALK ALRGLVRLKS LADGPTGKRQ TAHTLKCMQT LSRVQSQISS RRIRMLEENR ALQRQLMQKH AKELESLRRG
201: EEWDDSAQSK EQIEASVLSK YEAAVRRERA LAYSYSHQKT WKKSPRSANL LFMDPTNPQW GWSWLDRWMG AKPWDTQSMS EKEHKNDQMS VRSASIAGGE
301: ITKAFARYQL NSDLPSPSSQ KPSHQSPTTP SKPANSTASR KLKSARVAAI SQDDDARSMI SMQSERNNRR HSIGVASIRD DESLGSSSSV PSYMIPTKSA
401: KAKTRLQNPL GMENNSTPEK GPAGSVKKRL SYPPSPARPR RHSGPPKLEN TSMNTSINTS IAKDNVKEVI N
101: TQYTGKSKEE VAAIKIQTAF RGYLARRALK ALRGLVRLKS LADGPTGKRQ TAHTLKCMQT LSRVQSQISS RRIRMLEENR ALQRQLMQKH AKELESLRRG
201: EEWDDSAQSK EQIEASVLSK YEAAVRRERA LAYSYSHQKT WKKSPRSANL LFMDPTNPQW GWSWLDRWMG AKPWDTQSMS EKEHKNDQMS VRSASIAGGE
301: ITKAFARYQL NSDLPSPSSQ KPSHQSPTTP SKPANSTASR KLKSARVAAI SQDDDARSMI SMQSERNNRR HSIGVASIRD DESLGSSSSV PSYMIPTKSA
401: KAKTRLQNPL GMENNSTPEK GPAGSVKKRL SYPPSPARPR RHSGPPKLEN TSMNTSINTS IAKDNVKEVI N
001: MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR VAEVIVERNR DLSPPSTADA VNVTATDVPV VPSSSAPGVV
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
101: RRATPTRFAG KSNEEAAAIL IQTIFRGYLA RRALRAMRGL VRLKLLMEGS VVKRQAANTL KCMQTLSRVQ SQIRARRIRM SEENQARQKQ LLQKHAKELA
201: GLKNGDNWND SIQSKEKVEA NLLSKYEATM RRERALAYSY SHQQNWKNNS KSGNPMFMDP SNPTWGWSWL ERWMAGRPLE SSEKEQSNSN NDNAASVKGS
301: INRNEAAKSL TRNGSTQPNT PSSARGTPRN KNSFFSPPTP SRLNQSSRKS NDDDSKSTIS VLSERNRRHS IAGSSVRDDE SLAGSPALPS YMVPTKSARA
401: RLKPQSPLGG TTQENEGFTD KASAKKRLSY PTSPALPKPR RFSAPPKVES GGVTVTNGAG S
Arabidopsis Description
iqd2At5g03040/F15A17_70 [Source:UniProtKB/TrEMBL;Acc:Q93ZH7]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.