Factsheet for Solyc01g009340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038175	Potato	cytosol	92.06	71.76
Solyc10g005000.2.1	Tomato	nucleus	33.0	33.76
VIT_16s0098g01070.t01	Wine grape	mitochondrion, nucleus	36.72	32.03
GSMUA_Achr6P02050_001	Banana	cytosol	11.91	30.97
Solyc08g083240.2.1	Tomato	nucleus	37.22	30.67
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.49	30.15
GSMUA_Achr1P18950_001	Banana	nucleus	32.26	28.38
TraesCS7A01G317400.2	Wheat	nucleus	37.97	28.12
HORVU7Hr1G075720.1	Barley	plasma membrane	37.97	28.02
TraesCSU01G104800.3	Wheat	nucleus	37.72	27.89
TraesCS7B01G218800.3	Wheat	nucleus	37.72	27.89
GSMUA_Achr1P16160_001	Banana	nucleus	30.77	27.68
Os08t0115200-01	Rice	cytosol	36.72	27.26
CDY08131	Canola	nucleus	23.08	27.03
Bra017988.1-P	Field mustard	nucleus	23.08	26.57
Zm00001d049684_P002	Maize	cytosol, mitochondrion	35.73	26.47
EES14418	Sorghum	cytosol	37.47	26.31
CDY05931	Canola	nucleus	22.83	26.14
AT3G49380.1	Thale cress	nucleus	21.59	24.72
Solyc08g062940.2.1	Tomato	cytosol	16.13	21.04
Solyc04g050050.2.1	Tomato	cytosol	19.85	20.3
Solyc10g008790.2.1	Tomato	cytosol	13.65	18.09
Solyc11g071840.1.1	Tomato	cytosol	19.6	17.63
Solyc10g084280.1.1	Tomato	nucleus	20.1	16.95
Solyc06g052010.1.1	Tomato	cytosol	16.63	16.88
Solyc02g077260.2.1	Tomato	nucleus	12.41	16.56
Solyc10g086060.1.1	Tomato	cytosol	18.86	16.14
Solyc09g007410.2.1	Tomato	cytosol	19.11	15.94
Solyc03g121760.2.1	Tomato	cytosol	16.63	15.62
Solyc12g014130.1.1	Tomato	nucleus	9.93	15.33
Solyc03g083100.2.1	Tomato	nucleus	17.37	14.93
Solyc08g014280.2.1	Tomato	cytosol	19.11	14.29
Solyc06g053450.2.1	Tomato	nucleus	15.14	10.3

Protein Annotations

EnsemblPlants:Solyc01g009340.2.1	EnsemblPlantsGene:Solyc01g009340.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF0	PFAM:PF13178	PFscan:PS50096
SEG:seg	UniParc:UPI0002763527	UniProt:K4ATD0	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1:+:3537686..3541807

Molecular Weight (calculated)

46404.1 Da

IEP (calculated)

10.069

GRAVY (calculated)

-0.941

Length

403 amino acids

Sequence
(BLAST)

001: MKKKHVPSYN KHTQSQGTTT KTNDHQLSLV THEGETLLTK CFIGKSIIGG PSWLGLMKKA FRSPIKDDIK SIRRREEAQD QEEEEKARKA LGALKGVVKL
101: QALIRGHNVR KRAQITLQCM QSLVRVQTQV CDQRRRLSCE GISCGSMFKE PKSILELHLN DKESNSMNQA YIPDKDGYDH LHALEKIEAL LHKAKEATKK
201: RENTLAHAFS RKMWTSNKDE DSSYNAELDE DLRVFDLIDE KNRKSISRAS CDQPRDRIKN IEIDTACSYS DSDTEFWRLH HQYYRDHQQK FYSSYVVPSP
301: LSHREDINGL LMTPPLKMKN IQVHSASPRY RREEKSHHHR MALLSHRANV NSSPTAADQP SYMAATASAR ARERSQSTPR QIPMTPEREK TSSTKKRLSF
401: PIQ

Best Arabidopsis Sequence Match ( AT1G01110.2 )
(BLAST)

001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR

Arabidopsis Description

IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.