Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059119 | Potato | cytosol | 91.39 | 89.61 |
| Solyc10g008790.2.1 | Tomato | cytosol | 64.24 | 63.82 |
| VIT_10s0003g00860.t01 | Wine grape | cytosol, plastid | 53.31 | 52.61 |
| Solyc12g014130.1.1 | Tomato | nucleus | 40.07 | 46.36 |
| Solyc08g062940.2.1 | Tomato | cytosol | 26.49 | 25.89 |
| Solyc04g050050.2.1 | Tomato | cytosol | 26.16 | 20.05 |
| Solyc11g071840.1.1 | Tomato | cytosol | 29.14 | 19.64 |
| Solyc09g007410.2.1 | Tomato | cytosol | 29.47 | 18.43 |
| Solyc10g086060.1.1 | Tomato | cytosol | 28.15 | 18.05 |
| Solyc03g121760.2.1 | Tomato | cytosol | 24.83 | 17.48 |
| Solyc10g084280.1.1 | Tomato | nucleus | 27.48 | 17.36 |
| Solyc03g083100.2.1 | Tomato | nucleus | 25.17 | 16.2 |
| Solyc10g005000.2.1 | Tomato | nucleus | 19.87 | 15.23 |
| Solyc06g052010.1.1 | Tomato | cytosol | 19.21 | 14.61 |
| Solyc08g083240.2.1 | Tomato | nucleus | 20.53 | 12.68 |
| Solyc01g009340.2.1 | Tomato | nucleus | 16.56 | 12.41 |
| Solyc08g014280.2.1 | Tomato | cytosol | 21.85 | 12.24 |
| Solyc06g053450.2.1 | Tomato | nucleus | 20.86 | 10.64 |
Protein Annotations
| EnsemblPlants:Solyc02g077260.2.1 | EnsemblPlantsGene:Solyc02g077260.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF9 | PFAM:PF00612 | PFscan:PS50096 | SEG:seg |
| SMART:SM00015 | UniParc:UPI0002767B1E | UniProt:K4B8V3 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2:-:42250446..42253914
Molecular Weight (calculated)
34270.4 Da
IEP (calculated)
11.262
GRAVY (calculated)
-0.894
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSADWLKNV IGMRKAKDGR SKKNKGTSAN KKSNGCKGHN PLQKEPSKIT NIVLIKNQRE MGIPIEDRAA IKIQTAFRAY LARKTLRRLK GHTRLQSLTQ
101: RPSVKKQASS ALNYICSWNT MQNEIRARRV HMVMEGHLKR KKHENQLKLE TKLQNIEIEW SGGPETMEVI LARIHQREEA AVKRERAMAY AFSHQWRANS
201: NPVFGSGNNE MNKANWGWSW KDRWVAARPW ESRALVHASP KKVNDKANKN TKSTTSPIKK TPVSVILTSL NGKGTIKAKK SNEVAAQKVM SNEVKETSSE
301: KQ
101: RPSVKKQASS ALNYICSWNT MQNEIRARRV HMVMEGHLKR KKHENQLKLE TKLQNIEIEW SGGPETMEVI LARIHQREEA AVKRERAMAY AFSHQWRANS
201: NPVFGSGNNE MNKANWGWSW KDRWVAARPW ESRALVHASP KKVNDKANKN TKSTTSPIKK TPVSVILTSL NGKGTIKAKK SNEVAAQKVM SNEVKETSSE
301: KQ
001: MGSGWLLRSI ICLNGTKKNK SNRGNVHSET SNRVKPVESS SAASTKLTVE VAVIRIQKAF RAFKARKRLC SLKSARRFNS LIQGHTVMNQ TSTALNVIHS
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
Arabidopsis Description
IQD10IQ-domain 10 [Source:UniProtKB/TrEMBL;Acc:Q9LKA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.