Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15200 | Canola | nucleus | 81.4 | 83.95 |
| Bra033284.1-P | Field mustard | nucleus | 83.49 | 83.65 |
| CDX90011 | Canola | nucleus | 80.27 | 83.27 |
| AT4G00820.1 | Thale cress | mitochondrion, nucleus | 70.02 | 69.1 |
| Solyc10g005000.2.1 | Tomato | nucleus | 43.45 | 58.12 |
| PGSC0003DMT400029325 | Potato | mitochondrion | 35.67 | 56.63 |
| KRH47821 | Soybean | nucleus | 58.44 | 56.41 |
| KRH06386 | Soybean | mitochondrion, nucleus | 58.25 | 55.82 |
| VIT_15s0048g02680.t01 | Wine grape | nucleus | 57.87 | 54.76 |
| GSMUA_Achr1P16160_001 | Banana | nucleus | 42.13 | 49.55 |
| GSMUA_Achr1P18950_001 | Banana | nucleus | 42.69 | 49.13 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 42.88 | 49.02 |
| TraesCS7B01G218800.3 | Wheat | nucleus | 50.28 | 48.62 |
| TraesCSU01G104800.3 | Wheat | nucleus | 50.09 | 48.44 |
| HORVU7Hr1G075720.1 | Barley | plasma membrane | 50.09 | 48.35 |
| TraesCS7A01G317400.2 | Wheat | nucleus | 49.91 | 48.35 |
| Os08t0115200-01 | Rice | cytosol | 48.96 | 47.51 |
| GSMUA_Achr6P02050_001 | Banana | cytosol | 13.47 | 45.81 |
| EES14418 | Sorghum | cytosol | 48.58 | 44.6 |
| Zm00001d049684_P002 | Maize | cytosol, mitochondrion | 45.16 | 43.75 |
| AT4G10640.1 | Thale cress | nucleus | 33.02 | 41.13 |
| AT3G49380.1 | Thale cress | nucleus | 21.82 | 32.67 |
| AT3G52290.1 | Thale cress | cytosol | 22.58 | 27.67 |
| AT2G26180.1 | Thale cress | cytosol | 21.44 | 27.16 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 22.39 | 25.6 |
| AT3G22190.2 | Thale cress | cytosol | 19.92 | 24.88 |
| AT2G33990.1 | Thale cress | cytosol | 11.95 | 23.95 |
| AT1G72670.1 | Thale cress | cytosol | 18.6 | 23.67 |
| AT3G49260.3 | Thale cress | nucleus | 20.11 | 22.46 |
| AT3G59690.2 | Thale cress | nucleus | 21.44 | 21.86 |
| AT1G17480.1 | Thale cress | cytosol | 14.99 | 21.29 |
| AT3G09710.2 | Thale cress | nucleus | 18.22 | 20.51 |
| AT3G15050.1 | Thale cress | plastid | 9.87 | 20.08 |
| AT2G26410.2 | Thale cress | cytosol | 19.17 | 19.17 |
| AT2G43680.1 | Thale cress | nucleus | 20.68 | 16.29 |
Protein Annotations
| Gene3D:1.20.5.190 | MapMan:35.2 | EntrezGene:839394 | UniProt:A0A178WBA3 | ProteinID:AAF26462.1 | ProteinID:AEE27238.1 |
| ProteinID:AEE27239.1 | ArrayExpress:AT1G01110 | EnsemblPlantsGene:AT1G01110 | RefSeq:AT1G01110 | TAIR:AT1G01110 | RefSeq:AT1G01110-TAIR-G |
| EnsemblPlants:AT1G01110.2 | TAIR:AT1G01110.2 | InterPro:DUF4005 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000048 | Symbol:IQD18 | InterPro:IQ_motif_EF-hand-BS | RefSeq:NP_001117204.1 | RefSeq:NP_001318900.1 | ProteinID:OAP14775.1 |
| InterPro:P-loop_NTPase | PFAM:PF00612 | PFAM:PF13178 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0025022 | PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF50 | UniProt:Q9MAM4 |
| SMART:SM00015 | SUPFAM:SSF52540 | UniParc:UPI00000A51B9 | SEG:seg | : | : |
Description
IQD18IQ-domain 18 [Source:UniProtKB/TrEMBL;Acc:Q9MAM4]
Coordinates
chr1:+:51953..54737
Molecular Weight (calculated)
59175.1 Da
IEP (calculated)
10.936
GRAVY (calculated)
-0.977
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKNGSSSW LTAVKRAFRS PTKKDHSNDV EEDEEKKREK RRWFRKPATQ ESPVKSSGIS PPAPQEDSLN VNSKPSPETA PSYATTTPPS NAGKPPSAVV
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR
101: PIATSASKTL APRRIYYARE NYAAVVIQTS FRGYLARRAL RALKGLVKLQ ALVRGHNVRK QAKMTLRCMQ ALVRVQSRVL DQRKRLSHDG SRKSAFSDSH
201: AVFESRYLQD LSDRQSMSRE GSSAAEDWDD RPHTIDAVKV MLQRRRDTAL RHDKTNLSQA FSQKMWRTVG NQSTEGHHEV ELEEERPKWL DRWMATRPWD
301: KRASSRASVD QRVSVKTVEI DTSQPYSRTG AGSPSRGQRP SSPSRTSHHY QSRNNFSATP SPAKSRPILI RSASPRCQRD PREDRDRAAY SYTSNTPSLR
401: SNYSFTARSG CSISTTMVNN ASLLPNYMAS TESAKARIRS HSAPRQRPST PERDRAGLVK KRLSYPVPPP AEYEDNNSLR SPSFKSVAGS HFGGMLEQQS
501: NYSSCCTESN GVEISPASTS DFRNWLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.