Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025971.1-P | Field mustard | nucleus | 83.29 | 82.4 |
| CDY26241 | Canola | nucleus | 83.02 | 82.13 |
| CDY48305 | Canola | nucleus | 82.75 | 81.87 |
| AT1G72670.1 | Thale cress | cytosol | 71.16 | 63.77 |
| Solyc03g121760.2.1 | Tomato | cytosol | 45.28 | 39.16 |
| PGSC0003DMT400006376 | Potato | cytosol | 45.01 | 39.11 |
| KRH10035 | Soybean | cytosol | 43.67 | 38.94 |
| KRH23285 | Soybean | nucleus | 42.59 | 38.35 |
| KRH44124 | Soybean | mitochondrion | 43.4 | 38.24 |
| KRH47099 | Soybean | cytosol | 44.47 | 35.79 |
| AT2G26180.1 | Thale cress | cytosol | 39.89 | 35.58 |
| Os01t0708700-01 | Rice | cytosol | 39.62 | 33.33 |
| Os05t0541100-01 | Rice | plastid | 36.39 | 33.09 |
| EES03502 | Sorghum | mitochondrion | 38.81 | 32.95 |
| TraesCS3A01G251400.1 | Wheat | cytosol | 38.01 | 32.71 |
| Zm00001d043691_P001 | Maize | mitochondrion | 38.27 | 32.35 |
| TraesCS3B01G280900.1 | Wheat | cytosol | 37.47 | 32.33 |
| TraesCS3D01G251800.2 | Wheat | cytosol | 37.74 | 31.6 |
| Zm00001d038861_P001 | Maize | cytosol, plastid | 35.85 | 31.0 |
| TraesCS1B01G379600.1 | Wheat | mitochondrion | 33.96 | 30.29 |
| HORVU3Hr1G066840.2 | Barley | cytosol | 34.5 | 30.05 |
| TraesCS1A01G362400.1 | Wheat | mitochondrion | 32.61 | 29.58 |
| TraesCS1D01G367300.2 | Wheat | mitochondrion, plastid | 33.42 | 27.49 |
| HORVU1Hr1G079590.12 | Barley | cytosol | 33.15 | 26.28 |
| AT3G22190.2 | Thale cress | cytosol | 29.38 | 25.83 |
| KXG22437 | Sorghum | mitochondrion, plastid | 37.2 | 25.27 |
| AT3G15050.1 | Thale cress | plastid | 16.17 | 23.17 |
| AT2G33990.1 | Thale cress | cytosol | 15.63 | 22.05 |
| AT3G52290.1 | Thale cress | cytosol | 22.37 | 19.3 |
| AT4G10640.1 | Thale cress | nucleus | 21.83 | 19.15 |
| AT3G49260.3 | Thale cress | nucleus | 23.99 | 18.86 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 22.91 | 18.44 |
| AT3G49380.1 | Thale cress | nucleus | 15.63 | 16.48 |
| AT4G00820.1 | Thale cress | mitochondrion, nucleus | 23.45 | 16.29 |
| AT3G59690.2 | Thale cress | nucleus | 21.56 | 15.47 |
| AT3G09710.2 | Thale cress | nucleus | 19.14 | 15.17 |
| AT1G01110.2 | Thale cress | nucleus | 21.29 | 14.99 |
| AT2G26410.2 | Thale cress | cytosol | 17.52 | 12.33 |
| AT2G43680.1 | Thale cress | nucleus | 20.49 | 11.36 |
Protein Annotations
| Gene3D:1.20.5.190 | MapMan:35.2 | EntrezGene:838321 | UniProt:A0A178WK26 | ProteinID:AEE29597.1 | ArrayExpress:AT1G17480 |
| EnsemblPlantsGene:AT1G17480 | RefSeq:AT1G17480 | TAIR:AT1G17480 | RefSeq:AT1G17480-TAIR-G | EnsemblPlants:AT1G17480.1 | TAIR:AT1G17480.1 |
| EMBL:AY702665 | EMBL:BT032868 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR000048 | Symbol:IQD7 | InterPro:IQ_motif_EF-hand-BS | RefSeq:NP_173191.2 | ProteinID:OAP17875.1 | InterPro:P-loop_NTPase |
| PFAM:PF00612 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50096 |
| PANTHER:PTHR32295 | PANTHER:PTHR32295:SF25 | UniProt:Q2NND9 | SMART:SM00015 | SUPFAM:SSF52540 | UniParc:UPI000034F39D |
| SEG:seg | : | : | : | : | : |
Description
IQD7At1g17480 [Source:UniProtKB/TrEMBL;Acc:Q2NND9]
Coordinates
chr1:-:6006413..6008501
Molecular Weight (calculated)
41154.8 Da
IEP (calculated)
11.146
GRAVY (calculated)
-0.629
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSGNWIRS LISNRKPVND QQEKLSDKSS KKKWKLWRIS SESLASSSFK SRGSYAASSL GSELPSFSAD EAFTTAMAAL IRAPPRDFLM VKREWASTRI
101: QAAFRAFLAR QAFRALKAVV RIQAIFRGRQ VRKQAAVTLR CMQALVRVQS RVRAHRRAPS DSLELKDPVK QTEKGWCGSP RSIKEVKTKL QMKQEGAIKR
201: ERAMVYALTH QSRTCPSPSG RAITHHGLRK SSPGWNWYDD VGTFSRKSSE SSVLSEYETV TVRKNNLSST RVLARPPLLL PPVSSGMSYD SLHDETSTSS
301: TSQSPVAFSS SVLDGGGYYR KPSYMSLTQS TQAKQRQSGL SCNGDARRSA GSDQCTDLYP PGNVWAKSQR S
101: QAAFRAFLAR QAFRALKAVV RIQAIFRGRQ VRKQAAVTLR CMQALVRVQS RVRAHRRAPS DSLELKDPVK QTEKGWCGSP RSIKEVKTKL QMKQEGAIKR
201: ERAMVYALTH QSRTCPSPSG RAITHHGLRK SSPGWNWYDD VGTFSRKSSE SSVLSEYETV TVRKNNLSST RVLARPPLLL PPVSSGMSYD SLHDETSTSS
301: TSQSPVAFSS SVLDGGGYYR KPSYMSLTQS TQAKQRQSGL SCNGDARRSA GSDQCTDLYP PGNVWAKSQR S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.