Factsheet for Zm00001d038861_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22437	Sorghum	mitochondrion, plastid	85.78	67.4
Os05t0541100-01	Rice	plastid	62.24	65.44
TraesCS1B01G379600.1	Wheat	mitochondrion	57.81	59.62
TraesCS1A01G362400.1	Wheat	mitochondrion	56.18	58.92
Zm00001d043691_P001	Maize	mitochondrion	60.14	58.77
TraesCS1D01G367300.2	Wheat	mitochondrion, plastid	57.81	54.99
HORVU1Hr1G079590.12	Barley	cytosol	57.11	52.35
CDX72935	Canola	cytosol	24.94	40.68
Zm00001d039471_P001	Maize	cytosol	40.56	38.67
Solyc03g121760.2.1	Tomato	cytosol	38.46	38.46
PGSC0003DMT400006376	Potato	cytosol	38.23	38.41
KRH23285	Soybean	nucleus	34.97	36.41
AT1G72670.1	Thale cress	cytosol	34.97	36.23
Bra016042.1-P	Field mustard	cytosol	34.73	36.16
KRH10035	Soybean	cytosol	34.97	36.06
CDY26241	Canola	nucleus	31.47	36.0
Bra025971.1-P	Field mustard	nucleus	31.47	36.0
AT1G17480.1	Thale cress	cytosol	31.0	35.85
CDY48305	Canola	nucleus	31.24	35.73
KRH44124	Soybean	mitochondrion	33.57	34.2
KRH47099	Soybean	cytosol	34.27	31.89
Zm00001d034366_P003	Maize	mitochondrion	25.87	24.83
Zm00001d031098_P004	Maize	cytosol	27.27	23.17
Zm00001d010975_P003	Maize	cytosol	25.64	23.01
Zm00001d035492_P009	Maize	cytosol	25.17	22.69
Zm00001d033211_P002	Maize	cytosol	22.38	22.38
Zm00001d042973_P007	Maize	cytosol	26.34	22.29
Zm00001d045305_P001	Maize	nucleus	17.25	22.09
Zm00001d013112_P011	Maize	mitochondrion	24.71	21.03
Zm00001d049684_P002	Maize	cytosol, mitochondrion	25.87	20.4
Zm00001d009320_P001	Maize	nucleus	9.32	17.32
Zm00001d038395_P005	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.61	14.92
Zm00001d012167_P001	Maize	cytosol	20.05	14.88

Protein Annotations

EMBL:BT060687	EMBL:KJ728183	EnsemblPlants:Zm00001d038861_P001	EnsemblPlants:Zm00001d038861_T001	EnsemblPlantsGene:Zm00001d038861	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	PANTHER:PTHR32295
PANTHER:PTHR32295:SF34	PFAM:PF00612	PFscan:PS50096	ProteinID:AQK88084.1	SEG:seg	SMART:SM00015
SUPFAM:SSF52540	UniParc:UPI0001948A63	UniProt:C0HED1	MapMan:35.2	:	:

Description

IQ-domain 6

Coordinates

chr6:+:166018995..166021892

Molecular Weight (calculated)

46376.4 Da

IEP (calculated)

11.257

GRAVY (calculated)

-0.704

Length

429 amino acids

Sequence
(BLAST)

001: MGASGKWIKS LVALKAPEKA AGHKGGRKWR LWRSSSATSR ASAGEGSALA SESSSASADS FNSVLAAVVR APPRDFLLIR QEWAAVRIQT AFRGFLARRA
101: LKALRGIVRL QALVRGRRVR KQLAVTLKCM HALLRVQERA RERRARSSAD GHGSQGQDAL NGCASSTKDA MEQWCDRHGS VAEVRSNLHM KHEGAAKRER
201: AIAYALSHQP RGSRQKGTPS SPANCVRSHD PNGCNQDFSY LDGWMATKPW ETRSTERNHS DSQLAKHCEE PNLPASKLSD ASSVKIRRNN VTTRVSAAKR
301: PPPSSVLSAA SSDSAYGDKS PRSRPSVTLT SATTNTVLAS EARSDSGDTG GPNYMSLTKS AKARLSGCSG SSHHRSFQRP RSGDMSRVTL SSIDTQSNAG
401: SEISVTSKRL NSMSLNLKGR SLDKENEED

Best Arabidopsis Sequence Match ( AT2G26180.1 )
(BLAST)

001: MGASGKWVKS IIGLKKLEKD EIEKGNGKNK KWKLWRTTSV DSWKGFRGKH RSDSDGVDSS TVYSAAVATV LRAPPKDFKA VREEWAAIRI QTAFRGFLAR
101: RALRALKGIV RLQALVRGRQ VRKQAAVTLR CMQALVRVQA RVRARRVRMT VEGQAVQKLL DEHRTKSDLL KEVEEGWCDR KGTVDDIKSK LQQRQEGAFK
201: RERALAYALA QKQWRSTTSS NLKTNSSISY LKSQEFDKNS WGWSWLERWM AARPWETRLM DTVDTAATPP PLPHKHLKSP ETADVVQVRR NNVTTRVSAK
301: PPPHMLSSSP GYEFNESSGS SSICTSTTPV SGKTGLVSDN SSSQAKKHKP SYMSLTESTK AKRRTNRGLR QSMDEFQFMK NSGMFTGELK TSPSSDPFVS
401: FSKPLGVPTR FEKPRG

Arabidopsis Description

IQD6At2g26180 [Source:UniProtKB/TrEMBL;Acc:O64852]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.