Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32322 | Canola | cytosol, plastid | 81.47 | 81.47 |
| CDY20099 | Canola | cytosol | 83.01 | 81.44 |
| Bra021588.1-P | Field mustard | cytosol, plastid | 82.63 | 81.06 |
| AT2G33990.1 | Thale cress | cytosol | 45.17 | 44.49 |
| Solyc12g014130.1.1 | Tomato | nucleus | 44.79 | 44.44 |
| KRH55128 | Soybean | mitochondrion, nucleus | 50.19 | 43.92 |
| KRH27315 | Soybean | cytosol | 48.26 | 42.52 |
| VIT_19s0014g01690.t01 | Wine grape | cytosol | 50.19 | 42.07 |
| GSMUA_Achr6P14440_001 | Banana | nucleus | 27.41 | 41.52 |
| PGSC0003DMT400039646 | Potato | mitochondrion | 46.72 | 40.88 |
| GSMUA_Achr2P20050_001 | Banana | nucleus | 42.08 | 36.82 |
| KRH22000 | Soybean | plastid | 48.65 | 36.73 |
| HORVU7Hr1G024060.1 | Barley | plastid | 24.32 | 35.8 |
| EER87873 | Sorghum | nucleus | 44.79 | 34.83 |
| Zm00001d045305_P001 | Maize | nucleus | 44.4 | 34.33 |
| TraesCS7A01G112000.1 | Wheat | nucleus | 41.7 | 33.03 |
| TraesCS7D01G107600.2 | Wheat | nucleus | 41.31 | 32.72 |
| HORVU7Hr1G023980.1 | Barley | nucleus | 41.31 | 32.72 |
| TraesCS7B01G010100.1 | Wheat | nucleus | 40.93 | 32.42 |
| Os06t0155300-01 | Rice | plasma membrane | 44.02 | 32.29 |
| Zm00001d009320_P001 | Maize | nucleus | 23.94 | 26.84 |
| AT2G26180.1 | Thale cress | cytosol | 32.05 | 19.95 |
| AT3G22190.2 | Thale cress | cytosol | 28.19 | 17.3 |
| AT1G72670.1 | Thale cress | cytosol | 27.41 | 17.15 |
| AT3G52290.1 | Thale cress | cytosol | 27.03 | 16.28 |
| AT1G17480.1 | Thale cress | cytosol | 23.17 | 16.17 |
| AT5G03040.1 | Thale cress | cytosol, plastid | 27.03 | 15.18 |
| AT3G09710.2 | Thale cress | nucleus | 25.87 | 14.32 |
| AT2G26410.2 | Thale cress | cytosol | 26.64 | 13.09 |
| AT4G10640.1 | Thale cress | nucleus | 21.24 | 13.0 |
| AT3G49380.1 | Thale cress | nucleus | 16.6 | 12.22 |
| AT4G00820.1 | Thale cress | mitochondrion, nucleus | 23.55 | 11.42 |
| AT3G59690.2 | Thale cress | nucleus | 22.78 | 11.41 |
| AT3G49260.3 | Thale cress | nucleus | 20.46 | 11.23 |
| AT1G01110.2 | Thale cress | nucleus | 20.08 | 9.87 |
| AT2G43680.1 | Thale cress | nucleus | 21.62 | 8.37 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820734 | ProteinID:AEE75610.1 | ArrayExpress:AT3G15050 | EnsemblPlantsGene:AT3G15050 | RefSeq:AT3G15050 |
| TAIR:AT3G15050 | RefSeq:AT3G15050-TAIR-G | EnsemblPlants:AT3G15050.1 | TAIR:AT3G15050.1 | ProteinID:BAA97068.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR000048 | Symbol:IQD10 | InterPro:IQ_motif_EF-hand-BS |
| RefSeq:NP_188123.1 | PFAM:PF00612 | PO:PO:0000230 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009030 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF93 | UniProt:Q9LKA0 | UniParc:UPI00000A2F34 |
| SEG:seg | : | : | : | : | : |
Description
IQD10IQ-domain 10 [Source:UniProtKB/TrEMBL;Acc:Q9LKA0]
Coordinates
chr3:-:5066879..5068013
Molecular Weight (calculated)
29592.6 Da
IEP (calculated)
10.999
GRAVY (calculated)
-0.689
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGWLLRSI ICLNGTKKNK SNRGNVHSET SNRVKPVESS SAASTKLTVE VAVIRIQKAF RAFKARKRLC SLKSARRFNS LIQGHTVMNQ TSTALNVIHS
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
101: WYDIQNQIRA RRLYMVTQGR LQHKRLENRL KLEIKLHELE VEWCGGSETM EEILAKIQQK EEATVKRERA MAYAFSHQWR ANATQYLGQA SFNLGKESWG
201: WSWKERWIAA RPWEIRAQCY VVKPIKPSKK PEKSSPNNVI TKTSAKPDEV GNSKKPGSG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.