Factsheet for PGSC0003DMT400023467

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083100.2.1	Tomato	nucleus	96.38	96.38
PGSC0003DMT400050471	Potato	cytosol	51.17	58.97
KRH64435	Soybean	nucleus	56.72	57.45
KRH53505	Soybean	cytosol	54.37	57.17
VIT_16s0098g01790.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	56.29	57.14
KRH16503	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	55.44	56.77
AT3G49260.3	Thale cress	nucleus	47.33	47.03
CDY05917	Canola	mitochondrion, nucleus	47.12	46.53
Bra017997.1-P	Field mustard	nucleus, plastid	46.48	45.89
CDY08120	Canola	mitochondrion, nucleus	45.2	44.73
GSMUA_Achr10P...	Banana	cytosol	42.86	44.47
CDX86983	Canola	nucleus	44.78	44.21
Bra019589.1-P	Field mustard	nucleus	44.35	43.79
CDY00196	Canola	nucleus	44.35	43.79
CDY05918	Canola	mitochondrion	24.73	36.94
PGSC0003DMT400010610	Potato	nucleus	29.85	30.43
PGSC0003DMT400004433	Potato	cytosol	30.06	29.38
PGSC0003DMT400027139	Potato	cytosol	30.06	29.31
PGSC0003DMT400045333	Potato	cytosol	29.42	29.3
PGSC0003DMT400021183	Potato	cytosol	26.44	28.57
PGSC0003DMT400031576	Potato	nucleus	26.01	24.6
PGSC0003DMT400039646	Potato	mitochondrion	15.35	24.32
PGSC0003DMT400006376	Potato	cytosol	21.96	24.12
PGSC0003DMT400059119	Potato	cytosol	15.78	24.03
PGSC0003DMT400068456	Potato	cytosol	15.56	24.01
PGSC0003DMT400041427	Potato	cytosol	23.45	20.56
PGSC0003DMT400038175	Potato	cytosol	20.9	18.96
PGSC0003DMT400042121	Potato	cytosol, mitochondrion	23.88	18.15
PGSC0003DMT400029325	Potato	mitochondrion	11.51	16.27

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:102600586	MapMan:35.2	ncoils:Coil	InterPro:DUF4005	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:M1AIE9	PFAM:PF00612
PFAM:PF13178	EnsemblPlantsGene:PGSC0003DMG400009086	PGSC:PGSC0003DMG400009086	EnsemblPlants:PGSC0003DMT400023467	PFscan:PS50096	PANTHER:PTHR32295
PANTHER:PTHR32295:SF33	SMART:SM00015	UniParc:UPI000296A034	RefSeq:XP_006350537.1	RefSeq:XP_006350538.1	SEG:seg

Description

SF16 [Source:PGSC_GENE;Acc:PGSC0003DMG400009086]

Coordinates

chr3:-:48239179..48242195

Molecular Weight (calculated)

52177.0 Da

IEP (calculated)

10.373

GRAVY (calculated)

-0.849

Length

469 amino acids

Sequence
(BLAST)

001: MGKKGSGWFS SVKKVFKQSP KDSPDKKKET LDSKWQQPEP PEVVSLEHFP AGSSPDLISN GGSNVDSSST VAEDHNHAIA VAAATAAAAE AAVAAAHAAA
101: KVVRLAGGYG LLQSTEERAA TLIQSYYRGY LARRALRALK GLVRLQALVR GHNVRKQAQM TMRCMQALVR VQGRVRARRL QLVQERLESK LEEARRHAAE
201: EQQHKHTSPI KKSGAEGWDN RNQSMDKIQE SSRRKFDAEM KRERALAYAF AYQQKQQQLL HIDPHGDDAE FFGNEREKSQ WGWSWLERWM ASQPYQYSRH
301: IVPRDSSYVT PSTTSDMSEK TVEMDLITGP LDSETINSAR HTFDQAETSP YSARKVGHSK FDNVPSYMTP TKSAKAKVRN QGPVKHRSPP SAQWNASKRK
401: GAHYGLGLES SSGASTTAIY QVSRSPSPKT TANRSSGHAN KWMATYSPES SGDDRASPLG PHPWRYNFS

Best Arabidopsis Sequence Match ( AT3G49260.1 )
(BLAST)

001: MGKKGSGGWF STVKKKVFKS SPKDSKRENN IGSNNADIWQ QQHDTQEVVS FEHFPAESSP EISHDVESTA STPATNVGDR KHAMAVAIAT AAAAEAAVAA
101: AQAAAKVVRL AGYNRQTEED SAAVLIQSHY RGYLARRALR ALKGLVRLQA LVRGNHVRKQ AQMTMKCMQA LVRVQGRVRA RRLQVAHDRF KKQFEEEEKR
201: SGMEKPNKGF ANLKTEREKP KKLHEVNRTS LYQTQGKEKE RSEGMMKRER ALAYAYTYQR QMQHTNSEEG IGLSSNGPDR NQWAWNWLDH WMSSQPYTGR
301: QTGPGPGPGQ YNPPPYPPFP TAAATTTSDD VSEKTVEMDV TTPTSLKGNI IGLIDREYID LGSYRQGHKQ RKSPTHIPSY MAPTASAKAK VRDQGPTVKL
401: QGTSFMPYWN SSTKNGSVNG SGCDSSSSGG AITTGYPGPR SPNPKSDIRR KPVSPSQSPT GFGKRGWRHD H

Arabidopsis Description

iqd21IQ-domain 21 [Source:UniProtKB/TrEMBL;Acc:F4IWT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.