CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34906	Soybean	cytosol	89.78	90.89
KRH57858	Soybean	cytosol	50.31	54.19
KRH04761	Soybean	cytosol	50.51	51.14
AT3G52290.1	Thale cress	cytosol	40.29	45.81
KRG95941	Soybean	nucleus	44.38	45.49
Bra033443.1-P	Field mustard	cytosol	41.31	45.39
CDX95328	Canola	cytosol	41.31	45.39
CDY23202	Canola	cytosol	41.1	45.17
KRH67648	Soybean	nucleus	43.97	45.07
KRH19825	Soybean	cytosol	41.1	42.77
KRH32420	Soybean	cytosol	41.1	42.41
KRH32840	Soybean	mitochondrion, nucleus	7.98	29.55
KRH21320	Soybean	cytosol	17.79	29.1
KRH50151	Soybean	cytosol	16.97	28.62
KRH20344	Soybean	cytosol	16.97	27.95
KRH10977	Soybean	cytosol	17.59	27.92
KRH05433	Soybean	cytosol	23.52	27.84
KRH22612	Soybean	cytosol	24.13	27.76
KRH26707	Soybean	cytosol	23.93	27.73
KRH27315	Soybean	cytosol	16.56	27.55
KRH15576	Soybean	cytosol	23.31	27.34
KRH39086	Soybean	cytosol	23.93	26.96
KRH71267	Soybean	cytosol	28.63	26.17
KRH50198	Soybean	cytosol	27.61	25.33
KRH61522	Soybean	cytosol	23.11	25.11
KRH16503	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	23.52	25.11
KRH55128	Soybean	mitochondrion, nucleus	15.13	25.0
KRH37691	Soybean	mitochondrion	9.2	24.86
KRH52206	Soybean	cytosol	22.49	24.44
KRH53505	Soybean	cytosol	21.88	23.99
KRH64435	Soybean	nucleus	22.7	23.97
KRH22000	Soybean	plastid	16.77	23.91
KRH47821	Soybean	nucleus	26.38	23.63
KRH06386	Soybean	mitochondrion, nucleus	26.38	23.45
KRH10035	Soybean	cytosol	19.02	22.36
KRH23285	Soybean	nucleus	18.81	22.33
KRH44124	Soybean	mitochondrion	18.2	21.14
KRH47099	Soybean	cytosol	17.79	18.87

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100807725	MapMan:35.1	EMBL:ACUP02012710	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G177900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1NHD5	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS
EnsemblPlants:KRG91856	ProteinID:KRG91856	ProteinID:KRG91856.1	ProteinID:KRG91857.1	ProteinID:KRG91858.1	PFAM:PF00612
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF28	SMART:SM00015	UniParc:UPI000233DA14	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:41537188..41539817

Molecular Weight (calculated)

53662.2 Da

IEP (calculated)

11.084

GRAVY (calculated)

-0.820

Length

489 amino acids

Sequence
(BLAST)

001: MGRKGGWFSA VKRVFVSDSK KEQKHHHHHH HHKSKLGCFG THHYEDLEGA PIAVVPSLPP RKDPKPISEA ENNEQSRQAF SLVLATAVAA GAAVAAEVAC
101: LTNTPRSNGK ANQEMAAIKI QTAYRGYLAR RSLRGLRGLS RLKTLVQGQS VQRQAATTLQ CMQTLSRLQS QVRARKVRMS EENQALHRQL QQKREKEFDK
201: SQANQIGEKW DDSLKSKEQV EAKLLNRQVA AMRREKALVY ASTHQQTWRN SSKSATNAAF MDPNNPHWGW NWLERWMAAR PWEGQNTTYH IGHASAKSVA
301: SQTMSVGEIT KLYSLRDQNN DIKISPASQK PTCPPSHNSP STTASKVPLA NGAKAKVLSS PRGGSWGSDG DSKNMFSKTS ENSRRHSIGV SQVRDDESNS
401: SSSPSTKVAT KAKSSSSKVR SALVGEHSNG TPEKAASALI KKRLSFPASP AGTRRYAVST RPGNVASNKS VANATIPEEK VRMRNGGSR

Best Arabidopsis Sequence Match ( AT3G09710.1 )
(BLAST)

001: MVKKAKWLKN VKKAFSPDSK KLKHESVECQ DSVISYPVLI ATSRSSSPQF EVRVDEVNYE QKKNLYPPSS DSVTATVAHV LVDSPPSSPE SVHQAIVVNR
101: FAGKSKEEAA AILIQSTFRG HLARRESQVM RGQERLKLLM EGSVVQRQAA ITLKCMQTLS RVQSQIRSRR IRMSEENQAR HKQLLQKHAK ELGGLKNGGN
201: WNYSNQSKEQ VEAGMLHKYE ATMRRERALA YAFTHQQNLK SFSKTANPMF MDPSNPTWGW SWLERWMAGR PWESSEKEQN TTNNDNSSVK NSTNRNSQGG
301: ETAKSSNRNK LNSSTKPNTP SASSTATRNP RKKRPIPSSI KSKSSDDEAK SSERNRRPSI ARPSVSDDET LSSSTARRSS NLIPTTKSAR GKPKSQTSSR
401: VAVTTSTTEE SSILPEKAPA KKRLSTSASP APKPRRSSAP PKVEKGVLKA ERTP

Arabidopsis Description

IQD1IQ-domain 1 [Source:UniProtKB/TrEMBL;Acc:F4J1A4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.