Factsheet for Zm00001d054069_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010975_P003
Zm00001d014656_P003
Zm00001d035492_P009
Zm00001d036494_P001
Zm00001d038395_P005
Zm00001d042973_P007
Zm00001d048291_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	Zm00001d048291_P001	AT3G15000.1	21798944
AT4G10840.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT4G10840.1	Zm00001d036494_P001	AT3G21175.1	21798944
AT4G10840.1	Zm00001d010975_P003	AT5G03040.1	21798944
AT4G10840.1	Zm00001d035492_P009	AT5G03040.1	21798944
AT4G10840.1	Zm00001d038395_P005	AT5G03040.1	21798944
AT4G10840.1	Zm00001d042973_P007	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G004990.1	Barley	cytosol	79.97	89.79
Os02t0109800-01	Rice	plasma membrane	90.07	89.32
TraesCS6D01G030400.1	Wheat	cytosol	73.74	88.66
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	91.25	88.56
EES06120	Sorghum	plastid	90.24	87.58
TraesCS6B01G037200.1	Wheat	plastid	87.88	85.71
TraesCS6A01G026600.1	Wheat	plastid	87.71	76.17
Solyc08g008460.2.1	Tomato	cytosol, nucleus	50.17	74.87
GSMUA_Achr10P...	Banana	cytosol	68.01	69.18
KRH60081	Soybean	nucleus	65.15	68.74
KRH41360	Soybean	nucleus	66.67	68.51
CDX94243	Canola	cytosol	30.64	66.67
VIT_02s0025g02090.t01	Wine grape	plastid	64.31	64.64
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	64.48	64.26
KRH06445	Soybean	cytosol	59.26	63.54
PGSC0003DMT400014982	Potato	plastid	64.65	63.47
PGSC0003DMT400031631	Potato	plastid	64.14	63.39
AT4G10840.1	Thale cress	plastid	62.79	61.25
CDY05122	Canola	plastid	62.12	60.79
CDX90788	Canola	plastid	61.95	60.73
Bra000724.1-P	Field mustard	plastid	61.78	60.36
VIT_00s1429g00010.t01	Wine grape	cytosol	14.14	56.38
Zm00001d051589_P001	Maize	cytosol	54.88	45.72
Zm00001d017793_P001	Maize	cytosol	54.38	45.3
Zm00001d051893_P001	Maize	mitochondrion	22.73	21.95
Zm00001d027683_P001	Maize	mitochondrion	21.21	21.8

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	UniProt:A0A1D6QUW6	ProteinID:AQK61165.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13424
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF200	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000843652D	EnsemblPlantsGene:Zm00001d054069	EnsemblPlants:Zm00001d054069_P001
EnsemblPlants:Zm00001d054069_T001	SEG:seg	:	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr4:+:245857045..245859477

Molecular Weight (calculated)

64162.2 Da

IEP (calculated)

5.197

GRAVY (calculated)

-0.292

Length

594 amino acids

Sequence
(BLAST)

001: MPGLAASGNS PPAAAPAPRR LSSPLPRRAP PSPSPSASTR AKPRPPPAPT DDSLDNPDLG PFLLKQARDA MLSGEGGGAA RALEFAERAA RALERRGEGA
101: ELELAMSLHV AAAIHCGLGR HADAIPVLER AVAVVTPPPE TPAPAAEADD QAAEADDKLG EEWSLAAFSG WMQLGDTHAM LGRMDDSIAC YGKGLQIQMA
201: ALGDRDPRVA ETCRYLAEAH VQALQFDEAE KLCRKALEIH REHSAPASLE EASDRRLMAL ILDAKGDYDG ALEHLVLASM TMVANGRDIE VATIDVAIGN
301: TYLALARFDE AVFSYQKALT VLKSARGDDH PTVASVYVRL ADLYHRTGRL RESKSYCENA LRVYAKPAPG AAPDEIGGGL MEIAAIYEAL DDLDEALKLL
401: QRALKLLEDA PGQWSTVAGI EAQMGVLYYM VGRYAESRSS FESAVAKLRA SGERKSAFFG VLLNQMGLAC VQLFKIDEAA QLFEEARAVL EQECGASHPD
501: TLGVYSNLAA IYDAMGRVED AIEILEHVLK VREEKLGTAN PDVEDEKKRL AELLKEAGRS RNRKQKSLEN LFGTNSQRAK KEAGRRWSNF GFRS

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.