CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70333
CDX75801
CDX80849
CDX82454
CDX97626
CDX98522
CDY04876
CDY10410
CDY11238
CDY19576
CDY20096
CDY27538
CDY32326
CDY37312
CDY50073
CDY55696

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	CDX75801	AT3G15000.1	21798944
AT4G10840.1	CDX82454	AT3G15000.1	21798944
AT4G10840.1	CDX97626	AT3G15000.1	21798944
AT4G10840.1	CDX98522	AT3G15000.1	21798944
AT4G10840.1	CDY20096	AT3G15000.1	21798944
AT4G10840.1	CDY32326	AT3G15000.1	21798944
AT4G10840.1	CDY19576	AT3G21175.1	21798944
AT4G10840.1	CDY27538	AT3G21175.1	21798944
AT4G10840.1	CDY37312	AT3G21175.1	21798944
AT4G10840.1	CDY50073	AT3G21175.1	21798944
AT4G10840.1	CDX70333	AT5G03040.1	21798944
AT4G10840.1	CDX80849	AT5G03040.1	21798944
AT4G10840.1	CDY04876	AT5G03040.1	21798944
AT4G10840.1	CDY10410	AT5G03040.1	21798944
AT4G10840.1	CDY11238	AT5G03040.1	21798944
AT4G10840.1	CDY55696	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05122	Canola	plastid	98.84	98.68
Bra000724.1-P	Field mustard	plastid	97.52	97.2
AT4G10840.1	Thale cress	plastid	94.06	93.6
CDX94243	Canola	cytosol	38.78	86.08
KRH60081	Soybean	nucleus	73.93	79.57
KRH41360	Soybean	nucleus	75.74	79.41
Solyc08g008460.2.1	Tomato	cytosol, nucleus	51.82	78.89
VIT_02s0025g02090.t01	Wine grape	plastid	73.76	75.63
PGSC0003DMT400031631	Potato	plastid	72.11	72.71
PGSC0003DMT400014982	Potato	plastid	71.78	71.9
TraesCS6D01G030400.1	Wheat	cytosol	53.96	66.19
GSMUA_Achr10P...	Banana	cytosol	63.04	65.41
HORVU6Hr1G004990.1	Barley	cytosol	56.6	64.84
Zm00001d054069_P001	Maize	plasma membrane	60.73	61.95
Os02t0109800-01	Rice	plasma membrane	61.06	61.77
TraesCS6B01G037200.1	Wheat	plastid	61.39	61.08
EES06120	Sorghum	plastid	61.55	60.95
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	61.06	60.46
TraesCS6A01G026600.1	Wheat	plastid	61.72	54.68
CDX90092	Canola	cytosol, mitochondrion	10.23	49.6
CDY58518	Canola	cytosol	51.65	47.64
CDX86457	Canola	cytosol	52.15	47.59
CDY27619	Canola	nucleus	49.17	45.22
CDY56191	Canola	cytosol	50.0	42.56
CDY15411	Canola	mitochondrion	24.26	24.14
CDY19069	Canola	mitochondrion	23.93	23.54

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	EnsemblPlants:CDX90788	ProteinID:CDX90788	ProteinID:CDX90788.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151486001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF13181	PFAM:PF13374	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959
PANTHER:PTHR19959:SF202	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EF35A8	SEG:seg	:	:	:	:

Description

BnaA03g24680D

Coordinates

chrLK031864:-:525751..528509

Molecular Weight (calculated)

65847.7 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.322

Length

606 amino acids

Sequence
(BLAST)

001: MPTMPGLVSV KTPANAPPLR VSVPDTQQQP PRTPMKKTPS STPSRSKPSP GRSAKKDSPG VSSSAAAVPD VDDPSLDNPD LGPFLLKLAR DAIASGEGPN
101: KALDYAIRAT KSFERCCAAA APPVPGGSDG GPVLDLAMSL HVLAAIYCSL GRFDEAVPPL ERAIKVPDPA RGPDHSLAAF SGHMQLGDTL SMLGQIDRSI
201: ACYEEGLKIQ IQTLGETDPR VGETCRYLAE AYVQAMQFNK AEELCKKTLE IHRAHSEPAS LEEAADRRLM AIICEAKGDY ENALEHLVLA SMAMIASGQE
301: SEVASIDVSI GNIYMSLCRF DEAVFSYQKA LTVFKSSKGE THPTVASVFV RLAELYHRTG KLRESKSYCE NALRIYNKPV PGTTVEEIAG GLTEISAIYE
401: SVDEPEEALK LLQKSMKLLE DKPGQQSAIA GLEARMGVMY YTLGRYEDAR NAFESAVTKL RAAGEKSAFF GVVLNQMGLA CVQLFKIDEA GELFEEARVI
501: LEQERGPCDQ DTLGVYSNLA ATYDAMGRIE DAIEILEQVL KLREEKLGTA NPDFEDEKKR LAELLKEAGR SRNYKAKSLQ NLIDPNARPP KKEASGKKWP
601: GLGFKF

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.