CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19069	Canola	mitochondrion	90.64	89.61
AT2G31240.1	Thale cress	mitochondrion	83.42	82.33
KRH32172	Soybean	mitochondrion	59.93	59.35
KRH19545	Soybean	mitochondrion	59.61	58.93
VIT_07s0005g03110.t01	Wine grape	mitochondrion	61.74	58.11
Solyc09g066290.2.1	Tomato	plastid	57.14	53.87
GSMUA_Achr9P23570_001	Banana	mitochondrion	52.87	49.39
Zm00001d051893_P001	Maize	mitochondrion	47.45	46.99
EES07769	Sorghum	mitochondrion	47.45	46.92
Os02t0820300-01	Rice	mitochondrion	47.78	46.86
TraesCS6B01G437800.1	Wheat	mitochondrion	47.29	46.68
TraesCS6A01G398000.1	Wheat	mitochondrion	47.29	46.68
HORVU6Hr1G091620.4	Barley	mitochondrion	43.19	45.74
TraesCS6D01G382300.1	Wheat	mitochondrion	46.14	45.4
PGSC0003DMT400025136	Potato	plastid	58.13	45.21
GSMUA_Achr5P17290_001	Banana	plastid	33.66	41.0
Os03t0149400-01	Rice	mitochondrion	30.21	36.95
TraesCS4A01G415700.1	Wheat	mitochondrion	32.68	35.66
Zm00001d027683_P001	Maize	mitochondrion	33.83	35.64
TraesCS4D01G313100.1	Wheat	mitochondrion	32.51	35.61
EER95495	Sorghum	mitochondrion	33.0	35.14
TraesCS4B01G316500.2	Wheat	mitochondrion	32.18	27.64
CDX94243	Canola	cytosol	11.0	24.54
CDX90788	Canola	plastid	24.14	24.26
CDY05122	Canola	plastid	23.97	24.05
CDY27619	Canola	nucleus	21.67	20.03
CDX90092	Canola	cytosol, mitochondrion	4.11	20.0
CDY58518	Canola	cytosol	21.35	19.79
CDX86457	Canola	cytosol	21.18	19.43
CDY56191	Canola	cytosol	22.17	18.96

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078FQG4	EnsemblPlants:CDY15411	ProteinID:CDY15411	ProteinID:CDY15411.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00085722001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13181	PFAM:PF13374	PFAM:PF13424	PFscan:PS50293
PANTHER:PTHR19959	PANTHER:PTHR19959:SF168	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0004EBD51E	SEG:seg	:	:	:

Description

BnaC04g42120DBnaC04g42120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQG4]

Coordinates

chrLK032054:+:681818..683947

Molecular Weight (calculated)

67713.1 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.317

Length

609 amino acids

Sequence
(BLAST)

001: MKSLSISLIR RLQFHKFKPI PPLLRLIYIS DAPASSSSLL SSPREISTSS PTLNNNHFFY NPCRNLTTHV EDPPETPIDQ EKLDLEEAFE SATTTDEMVR
101: LFKQMELTFE GNELGLSALK LGLHLDREGD DPETVLSYAT KALRSFDVDS KPNLLTAMAL QLMGSANYGL KRFSDGLGYL NRANRILVKL EKDGDCVVED
201: VRPVLHAVHL ELANVKNAMG RREEAIENLK KSLEIKEMAF EEDSKEMGAA NRSLADAYVA VLNFNEALPY ALKALEIHKK ELGSNSAEVA QDRRVLGVIY
301: SGLEQHDKAL EQNRLSQRVL KNWGMKGELI RAEIDAANMK VALGRYDEAI DVLRRVVEGT DEGSEMRGMV FISMSKALVN QQKFAESKKC LEMACEILEK
401: KEGSSPVEVA EAYSEVAMQY ESMNEFEVAI SLLQKTLGIL ERLPQEQHSE GSVAARIGWL LLFSGRVSQA VPYLESAAER LKESFGAKHF GVGYVYNNLG
501: AAYLELGRPQ SAAQMFAVAK DIMDVSLGPN HVDSIDACQN LSKAYAGMGN YSLAVEFQQQ VIKAWDNHGD SAKDELKEAK RLFEELRLKA RGGVSTDKVP
601: TKALPLPKK

Best Arabidopsis Sequence Match ( AT2G31240.1 )
(BLAST)

001: MKSLSISLIR RLHFHKIRPI PLSIHLNAAS SSSSSSSLIS PAREISTSCR RTNDLIKRQF WVNPYRNLNT HVEEPPEISS SDKEKIDLEE AFESANTTDE
101: MVRLFKEMEL SFEGNELGLS ALKLGLHLDR EGEDPEKVLS YADKALKSFD GDGNKPNLLV AMASQLMGSA NYGLKRFSDS LGYLNRANRI LVKLEADGDC
201: VVEDVRPVLH AVQLELANVK NAMGRREEAI ENLKKSLEIK EMTFDEDSKE MGVANRSLAD AYVAVLNFNE ALPYALKALE IHKKELGNNS AEVAQDRRLL
301: GVIYSGLEQH DKALEQNRLS QRVLKNWGMK LELIRAEIDA ANMKVALGKY EEAIDILKSV VQQTDKDSEM RAMVFISMSK ALVNQQKFAE SKRCLEFACE
401: ILEKKETALP VEVAEAYSEV AMQYESMNEF ETAISLLQKT LGILEKLPQE QHSEGSVSAR IGWLLLFSGR VSQAVPYLES AAERLKESFG AKHFGVGYVY
501: NNLGAAYLEL GRPQSAAQMF AVAKDIMDVS LGPNHVDSID ACQNLSKAYA GMGNYSLAVE FQQRVINAWD NHGDSAKDEM KEAKRLLEDL RLKARGGVST
601: NKLLNKALPL PKPSHSS

Arabidopsis Description

Putative kinesin light chain [Source:UniProtKB/TrEMBL;Acc:Q8VZQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.