CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70333
CDX75801
CDX80849
CDX82454
CDX97626
CDX98522
CDY04876
CDY10410
CDY11238
CDY19576
CDY20096
CDY27538
CDY32326
CDY37312
CDY50073
CDY55696

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	CDX75801	AT3G15000.1	21798944
AT4G10840.1	CDX82454	AT3G15000.1	21798944
AT4G10840.1	CDX97626	AT3G15000.1	21798944
AT4G10840.1	CDX98522	AT3G15000.1	21798944
AT4G10840.1	CDY20096	AT3G15000.1	21798944
AT4G10840.1	CDY32326	AT3G15000.1	21798944
AT4G10840.1	CDY19576	AT3G21175.1	21798944
AT4G10840.1	CDY27538	AT3G21175.1	21798944
AT4G10840.1	CDY37312	AT3G21175.1	21798944
AT4G10840.1	CDY50073	AT3G21175.1	21798944
AT4G10840.1	CDX70333	AT5G03040.1	21798944
AT4G10840.1	CDX80849	AT5G03040.1	21798944
AT4G10840.1	CDY04876	AT5G03040.1	21798944
AT4G10840.1	CDY10410	AT5G03040.1	21798944
AT4G10840.1	CDY11238	AT5G03040.1	21798944
AT4G10840.1	CDY55696	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g008460.2.1	Tomato	cytosol, nucleus	72.89	50.0
CDX90092	Canola	cytosol, mitochondrion	18.68	40.8
CDX90788	Canola	plastid	86.08	38.78
CDY05122	Canola	plastid	86.08	38.72
AT4G10840.1	Thale cress	plastid	85.35	38.26
KRH60081	Soybean	nucleus	78.02	37.83
TraesCS6D01G030400.1	Wheat	cytosol	67.77	37.45
KRH41360	Soybean	nucleus	78.39	37.02
HORVU6Hr1G004990.1	Barley	cytosol	67.77	34.97
PGSC0003DMT400031631	Potato	plastid	73.99	33.61
VIT_02s0025g02090.t01	Wine grape	plastid	72.16	33.33
PGSC0003DMT400014982	Potato	plastid	73.63	33.22
GSMUA_Achr10P...	Banana	cytosol	68.5	32.02
Zm00001d054069_P001	Maize	plasma membrane	66.67	30.64
TraesCS6B01G037200.1	Wheat	plastid	67.77	30.38
Os02t0109800-01	Rice	plasma membrane	66.3	30.22
EES06120	Sorghum	plastid	67.4	30.07
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	65.93	29.41
TraesCS6A01G026600.1	Wheat	plastid	67.77	27.05
CDY58518	Canola	cytosol	58.24	24.2
CDX86457	Canola	cytosol	58.61	24.1
CDY27619	Canola	nucleus	55.31	22.91
CDY56191	Canola	cytosol	55.31	21.21
CDY15411	Canola	mitochondrion	24.54	11.0
CDY19069	Canola	mitochondrion	23.81	10.55

Protein Annotations

EnsemblPlants:CDX94243	EnsemblPlantsGene:GSBRNA2T00157218001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
ncoils:Coil	PANTHER:PTHR19959	PANTHER:PTHR19959:SF202	PFAM:PF13424	PFscan:PS50293	ProteinID:CDX94243
ProteinID:CDX94243.1	SMART:SM00028	SUPFAM:SSF48452	UniParc:UPI0004EB4B76	MapMan:21.1.1.4.3	:

Description

BnaC02g29030D

Coordinates

chrLK031880:-:319018..320303

Molecular Weight (calculated)

31152.3 Da

IEP (calculated)

4.745

GRAVY (calculated)

-0.380

Length

273 amino acids

Sequence
(BLAST)

001: MQFNKAEDLC KKTLEIQCAH SEPASLEEPA DMRLMAIICE AKRNFENALE HLVLASMAMI ASRKESEVAS IDVSIGNMYM SLCRFDKSVF SYKHALTMFK
101: SSKGETHPTF RTGKLRESKS YCENALRIYN KPVPEELWRR LLARMGVMYY TLGRYEDTRN AFESAVTKLH SAGEKSALFG VVLNQMGLEY VQLFKIDEAG
201: ELFEEAREIL EQECGPCDQD TLGVYSNLAA TYYAMERIED AIEILEQLRK LGEEKLGTAN PDFEDEEKRL AEL

Best Arabidopsis Sequence Match ( AT1G27500.1 )
(BLAST)

001: MEGGSVNESH SNADQMFDTT IEELCKNLCE LQSSNQSPSR QSFGSYGDES KIDSDLQHLA LGEMRDIDIL EDEGDEDEVA KPEEFDVKSN SSNLDLEVMP
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.