CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88899
EER92766
EER92767
KXG21175
KXG33651
OQU78148
OQU89756

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	EER92766	AT3G15000.1	21798944
AT4G10840.1	EER92767	AT3G15000.1	21798944
AT4G10840.1	OQU89756	AT3G15000.1	21798944
AT4G10840.1	EER88899	AT3G21175.1	21798944
AT4G10840.1	KXG21175	AT5G03040.1	21798944
AT4G10840.1	KXG33651	AT5G03040.1	21798944
AT4G10840.1	OQU78148	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	91.5	91.5
Os02t0109800-01	Rice	plasma membrane	88.89	90.82
Zm00001d054069_P001	Maize	plasma membrane	87.58	90.24
TraesCS6D01G030400.1	Wheat	cytosol	72.55	89.88
HORVU6Hr1G004990.1	Barley	cytosol	77.29	89.41
TraesCS6B01G037200.1	Wheat	plastid	86.76	87.19
TraesCS6A01G026600.1	Wheat	plastid	87.25	78.07
Solyc08g008460.2.1	Tomato	cytosol, nucleus	47.88	73.62
GSMUA_Achr10P...	Banana	cytosol	65.36	68.49
KRH60081	Soybean	nucleus	62.75	68.21
CDX94243	Canola	cytosol	30.07	67.4
KRH41360	Soybean	nucleus	63.4	67.13
VIT_02s0025g02090.t01	Wine grape	plastid	61.93	64.13
PGSC0003DMT400014982	Potato	plastid	63.07	63.8
PGSC0003DMT400031631	Potato	plastid	62.58	63.73
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	61.93	63.59
KRH06445	Soybean	cytosol	57.52	63.54
AT4G10840.1	Thale cress	plastid	61.27	61.58
CDX90788	Canola	plastid	60.95	61.55
CDY05122	Canola	plastid	60.95	61.45
Bra000724.1-P	Field mustard	plastid	60.95	61.35
VIT_00s1429g00010.t01	Wine grape	cytosol	13.73	56.38
EES05647	Sorghum	cytosol	54.25	46.56
EES07769	Sorghum	mitochondrion	22.39	22.24
EER95495	Sorghum	mitochondrion	19.93	21.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	EntrezGene:8066495	UniProt:C5XRM1	ncoils:Coil	EnsemblPlants:EES06120
ProteinID:EES06120	ProteinID:EES06120.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886
GO:GO:0016020	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13424	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF200	SMART:SM00028	EnsemblPlantsGene:SORBI_3004G006700	SUPFAM:SSF48452
unigene:Sbi.7538	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001A85E0D	RefSeq:XP_002453144.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:569120..572297

Molecular Weight (calculated)

65912.1 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.341

Length

612 amino acids

Sequence
(BLAST)

001: MPGLAASDNS PPSAAPPPRR LSSPLPRRAP PSPSPSASSR AKPRKPSPSP APAPDADDSL DNPDLGPFLL KQARDAMVSG EGGGAARALE FAERAARALE
101: RRGEGAELEL AMSLHVAAAI HCGLGRHADA IPVLERAVAV VTPPPPEAPA ADGEGEGVGE AAGGGGDDQQ RAEPDQRGEE WSLAAFSGWM QLGDTHAMLG
201: RMDESIACYG KGLEIQMAAL GERDPRVAET CRYLAEAHVQ ALQFDEAEKL CRKALEIHRE HSAPASLEEA SDRRLMALIL DAKGDYDGAL EHLVLASMTM
301: VANGRDIEVA TIDVAIGNTY LALARFDEAV FSYQKALTVL KSARGDDHPT VASVYVRLAD LYHRTGRLRE SKSYCENALR VYAKPAPGAA PDEIAGGLME
401: IAAIYEALGD LDEALKLLQR ALKLLEDSPG QWSTVAGIEA QMGVLYYMVG RYADSRNSFE SAVAKLRASG ERKSAFFGVL LNQMGLACVQ LFKIDEAAQL
501: FEEARAVLEQ ECGASHPDTL GVYSNLAAIY DAMGRVEDAI EILEHVLKVR EEKLGTANPD VEDEKKRLAE LLKEAGRSRN RKQKSLENLF VTNSQRAKKE
601: AGRRWSNFGF RS

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.