Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G037200.1 | Wheat | plastid | 86.11 | 96.72 |
| HORVU6Hr1G004990.1 | Barley | cytosol | 74.27 | 96.03 |
| TraesCS6D01G030400.1 | Wheat | cytosol | 68.71 | 95.14 |
| Os02t0109800-01 | Rice | plasma membrane | 79.24 | 90.48 |
| Zm00001d054069_P001 | Maize | plasma membrane | 76.17 | 87.71 |
| EES06120 | Sorghum | plastid | 78.07 | 87.25 |
| Zm00001d014961_P001 | Maize | extracellular, mitochondrion, plasma membrane | 75.88 | 84.8 |
| Solyc08g008460.2.1 | Tomato | cytosol, nucleus | 42.69 | 73.37 |
| GSMUA_Achr10P... | Banana | cytosol | 59.21 | 69.35 |
| KRH60081 | Soybean | nucleus | 56.87 | 69.09 |
| KRH41360 | Soybean | nucleus | 57.46 | 67.99 |
| CDX94243 | Canola | cytosol | 27.05 | 67.77 |
| VIT_15s0046g00220.t01 | Wine grape | cytosol, plastid | 55.56 | 63.76 |
| KRH06445 | Soybean | cytosol | 51.61 | 63.72 |
| PGSC0003DMT400031631 | Potato | plastid | 55.85 | 63.56 |
| PGSC0003DMT400014982 | Potato | plastid | 56.14 | 63.47 |
| VIT_02s0025g02090.t01 | Wine grape | plastid | 54.39 | 62.94 |
| CDY05122 | Canola | plastid | 54.82 | 61.78 |
| CDX90788 | Canola | plastid | 54.68 | 61.72 |
| AT4G10840.1 | Thale cress | plastid | 54.68 | 61.41 |
| Bra000724.1-P | Field mustard | plastid | 54.53 | 61.35 |
| VIT_00s1429g00010.t01 | Wine grape | cytosol | 12.28 | 56.38 |
| TraesCS6A01G274500.1 | Wheat | cytosol | 47.95 | 46.26 |
| TraesCS6A01G398000.1 | Wheat | mitochondrion | 20.61 | 22.85 |
| TraesCS4A01G415700.1 | Wheat | mitochondrion | 18.42 | 22.58 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:21.1.1.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0005886 | GO:GO:0016020 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF13181 |
| PFAM:PF13374 | PFAM:PF13424 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR19959 | PANTHER:PTHR19959:SF200 |
| SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | EnsemblPlantsGene:TraesCS6A01G026600 |
| EnsemblPlants:TraesCS6A01G026600.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:13382689..13386367
Molecular Weight (calculated)
73956.3 Da
IEP (calculated)
6.304
GRAVY (calculated)
-0.250
Length
684 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGLAAADAS PPAAAPAPRR LSSPLPRRAP PSPSPSSASR AVGKPARKSL GQGQHPEATD EAALDNPDLG PFLLKQARDA MVSGEGGGAA RALEFAERAA
101: RALERRGEGA ELELAMSLHV AAAIHCGLGR HADAVPVLER AVAVVTPPPA PAPVAEGEEV PQPEEEVDER KGEEWALAAF SGWMQLGDTH AMLGRMDESI
201: ACYGKGFEIQ MAALGDRDPR VAETCRSVAF SRSRSPSPLL PPPPILLVKR KISPFFTAFS FSFMLPRISA KIGIKITANT YEIHRQRPKI TNALLLYDDR
301: YLAEAHVQAL QFDEAEKLCR KALEIHREHS APASLEEASD RRLMALILDA KGDYDGALEH LVLASMTMVA NGRDVEVATI DVAIGNTYLA LARFDESVFS
401: YQKALTVLKS ARGDDHPSVA SVFVRLADLY HRTGKLRESK SYCENALRVY AKPAPGAAPD EVAGGLMEIA AIYEALGDLD EALKLLQRAL KLLEDSPGQW
501: STVAGIEAQM GVLYYMIGRY ADSRNSFESA VSKLRASGER KSAFFGVLLN QMGLACVQLF KIDEAAQLFE EARAVLEQEC GASHPDTLGV YSNLAAIYDA
601: MGRVEDAIEI LEHVLKVREE KLGTANPDVE DEKKRLAELL KEAGRSRNRK QKSLENLFGS GGAARGAKKD GSGGRRWTNF GFRS
101: RALERRGEGA ELELAMSLHV AAAIHCGLGR HADAVPVLER AVAVVTPPPA PAPVAEGEEV PQPEEEVDER KGEEWALAAF SGWMQLGDTH AMLGRMDESI
201: ACYGKGFEIQ MAALGDRDPR VAETCRSVAF SRSRSPSPLL PPPPILLVKR KISPFFTAFS FSFMLPRISA KIGIKITANT YEIHRQRPKI TNALLLYDDR
301: YLAEAHVQAL QFDEAEKLCR KALEIHREHS APASLEEASD RRLMALILDA KGDYDGALEH LVLASMTMVA NGRDVEVATI DVAIGNTYLA LARFDESVFS
401: YQKALTVLKS ARGDDHPSVA SVFVRLADLY HRTGKLRESK SYCENALRVY AKPAPGAAPD EVAGGLMEIA AIYEALGDLD EALKLLQRAL KLLEDSPGQW
501: STVAGIEAQM GVLYYMIGRY ADSRNSFESA VSKLRASGER KSAFFGVLLN QMGLACVQLF KIDEAAQLFE EARAVLEQEC GASHPDTLGV YSNLAAIYDA
601: MGRVEDAIEI LEHVLKVREE KLGTANPDVE DEKKRLAELL KEAGRSRNRK QKSLENLFGS GGAARGAKKD GSGGRRWTNF GFRS
001: MEGGSVNESH SNADQMFDTT IEELCKNLCE LQSSNQSPSR QSFGSYGDES KIDSDLQHLA LGEMRDIDIL EDEGDEDEVA KPEEFDVKSN SSNLDLEVMP
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.