Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G004990.1 | Barley | cytosol | 94.74 | 88.47 |
| TraesCS6B01G037200.1 | Wheat | plastid | 97.37 | 78.98 |
| Os02t0109800-01 | Rice | plasma membrane | 90.28 | 74.46 |
| Zm00001d054069_P001 | Maize | plasma membrane | 88.66 | 73.74 |
| Solyc08g008460.2.1 | Tomato | cytosol, nucleus | 59.11 | 73.37 |
| EES06120 | Sorghum | plastid | 89.88 | 72.55 |
| Zm00001d014961_P001 | Maize | extracellular, mitochondrion, plasma membrane | 88.46 | 71.41 |
| TraesCS6A01G026600.1 | Wheat | plastid | 95.14 | 68.71 |
| CDX94243 | Canola | cytosol | 37.45 | 67.77 |
| GSMUA_Achr10P... | Banana | cytosol | 73.68 | 62.33 |
| KRH60081 | Soybean | nucleus | 69.84 | 61.28 |
| KRH41360 | Soybean | nucleus | 70.24 | 60.03 |
| KRH06445 | Soybean | cytosol | 64.37 | 57.4 |
| PGSC0003DMT400031631 | Potato | plastid | 68.42 | 56.24 |
| VIT_15s0046g00220.t01 | Wine grape | cytosol, plastid | 67.61 | 56.04 |
| PGSC0003DMT400014982 | Potato | plastid | 68.62 | 56.03 |
| VIT_02s0025g02090.t01 | Wine grape | plastid | 67.0 | 56.01 |
| CDY05122 | Canola | plastid | 66.4 | 54.04 |
| CDX90788 | Canola | plastid | 66.19 | 53.96 |
| Bra000724.1-P | Field mustard | plastid | 66.19 | 53.78 |
| AT4G10840.1 | Thale cress | plastid | 66.19 | 53.69 |
| TraesCS6D01G254800.1 | Wheat | cytosol | 59.51 | 41.41 |
| VIT_00s1429g00010.t01 | Wine grape | cytosol | 10.93 | 36.24 |
| TraesCS6D01G382300.1 | Wheat | mitochondrion | 23.89 | 19.06 |
| TraesCS4D01G313100.1 | Wheat | mitochondrion | 21.26 | 18.88 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:21.1.1.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0005886 | GO:GO:0016020 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF13424 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR19959 | PANTHER:PTHR19959:SF200 | SMART:SM00028 | SUPFAM:SSF48452 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | EnsemblPlantsGene:TraesCS6D01G030400 | EnsemblPlants:TraesCS6D01G030400.1 | SEG:seg |
Description
No Description!
Coordinates
chr6D:-:11891009..11893802
Molecular Weight (calculated)
53813.0 Da
IEP (calculated)
5.010
GRAVY (calculated)
-0.223
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLHVAAAIH CGLGRHADAV PVLERAVAVV TPPAPAAEGE EVPQPEEEQV VDERKGEEWA LAAFSGWMQL GDTHAMLGRM DESIACYGKG FEIQMAALGD
101: RDPRVAETCR YLAEAHVQAL QFDEAEKLCR KALEIHREHS APASLEEASD RRLMALILDA KGDYDGALEH LVLASMTMVA NGRDVEVATI DVAIGNTYLA
201: LARFDESVFS YQKALTVLKS ARGDDHPSVA SVFVRLADLY HRTGKLRESK SYCENALRVY AKPAPGAAPD EVAGGLMEIA AIYEALGDLD EALKLLQRAL
301: KLLEDSPGQW STVAGIEAQM GVLYYMIGRY ADSRNSFESA VSKLRASGER KSAFFGVLLN QMGLACVQLF KIDEAAQLFE EARAVLEQEC GASHPDTLGV
401: YSNLAAIYDA MGRVEDAIEI LEHVLKVREE KLGTANPDVE DEKKRLAELL KEAGRSRNRK QKSLENLFGS GGAARGAKKD GAGGRRWTNF GFRS
101: RDPRVAETCR YLAEAHVQAL QFDEAEKLCR KALEIHREHS APASLEEASD RRLMALILDA KGDYDGALEH LVLASMTMVA NGRDVEVATI DVAIGNTYLA
201: LARFDESVFS YQKALTVLKS ARGDDHPSVA SVFVRLADLY HRTGKLRESK SYCENALRVY AKPAPGAAPD EVAGGLMEIA AIYEALGDLD EALKLLQRAL
301: KLLEDSPGQW STVAGIEAQM GVLYYMIGRY ADSRNSFESA VSKLRASGER KSAFFGVLLN QMGLACVQLF KIDEAAQLFE EARAVLEQEC GASHPDTLGV
401: YSNLAAIYDA MGRVEDAIEI LEHVLKVREE KLGTANPDVE DEKKRLAELL KEAGRSRNRK QKSLENLFGS GGAARGAKKD GAGGRRWTNF GFRS
001: MEGGSVNESH SNADQMFDTT IEELCKNLCE LQSSNQSPSR QSFGSYGDES KIDSDLQHLA LGEMRDIDIL EDEGDEDEVA KPEEFDVKSN SSNLDLEVMP
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.