Factsheet for Solyc08g008460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g007410.2.1
Solyc10g084280.1.1
Solyc10g086060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	Solyc09g007410.2.1	AT5G03040.1	21798944
AT4G10840.1	Solyc10g084280.1.1	AT5G03040.1	21798944
AT4G10840.1	Solyc10g086060.1.1	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94243	Canola	cytosol	50.0	72.89
PGSC0003DMT400014982	Potato	plastid	96.98	63.8
TraesCS6D01G030400.1	Wheat	cytosol	73.37	59.11
KRH60081	Soybean	nucleus	82.66	58.44
KRH41360	Soybean	nucleus	82.41	56.75
VIT_02s0025g02090.t01	Wine grape	plastid	83.42	56.18
HORVU6Hr1G004990.1	Barley	cytosol	73.37	55.2
GSMUA_Achr10P...	Banana	cytosol	79.9	54.45
CDX90788	Canola	plastid	78.89	51.82
CDY05122	Canola	plastid	78.89	51.73
AT4G10840.1	Thale cress	plastid	79.15	51.72
Bra000724.1-P	Field mustard	plastid	78.89	51.64
Zm00001d054069_P001	Maize	plasma membrane	74.87	50.17
Os02t0109800-01	Rice	plasma membrane	74.12	49.25
TraesCS6B01G037200.1	Wheat	plastid	73.37	47.95
EES06120	Sorghum	plastid	73.62	47.88
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	72.86	47.39
TraesCS6A01G026600.1	Wheat	plastid	73.37	42.69
Solyc03g114320.2.1	Tomato	cytosol	65.58	35.75
Solyc02g086840.2.1	Tomato	cytosol	61.31	34.32
Solyc09g066290.2.1	Tomato	plastid	24.87	15.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886
GO:GO:0016020	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4CIY0	PFAM:PF13374
PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF200	SMART:SM00028
SUPFAM:SSF48452	EnsemblPlantsGene:Solyc08g008460.2	EnsemblPlants:Solyc08g008460.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000276AC7D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:2848726..2851059

Molecular Weight (calculated)

44394.9 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.348

Length

398 amino acids

Sequence
(BLAST)

001: MEALGDTDPR VAETCRYLAE AHVQAMQFDE AENLCKKTLE IHRAHSPPAS LEEAADRRLM ALICEAKCDY ESALEHLVLA NMAMIANGQE TEVAAIDVGI
101: GNIYLSLSRF DEAVFSYQKA LTVFKSSKGD NHPSVASVYV RLADLYYKTG KLRESRSYCE NALRIYAKPV PGTTPEDIAC GLTEISAVYE LFNEPEEALK
201: LLLKAMKLLE DKPGQQSTIA GIEARMGVMF YMVGRYEEAR SSLENAVIKL RASGERKSAF FGVVLNQMGL SSVQLFKIDE AAELFEEAKE ILEQECGHCH
301: QDTLGVYSNL AATYDAIGRV DDAIEILEYV LKLREEKLGT ANPDFNDEKK RLAELLKEAG RSRNKNPKSL ENLIDPNSKR TTKKETSSKK WSAFGFRS

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.