Factsheet for VIT_02s0025g02090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0040g02360.t01
VIT_09s0054g00440.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	VIT_09s0054g00440.t01	AT3G21175.1	21798944
AT4G10840.1	VIT_08s0040g02360.t01	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g008460.2.1	Tomato	cytosol, nucleus	56.18	83.42
KRH60081	Soybean	nucleus	77.67	81.53
KRH41360	Soybean	nucleus	78.68	80.45
PGSC0003DMT400031631	Potato	plastid	81.05	79.7
PGSC0003DMT400014982	Potato	plastid	78.68	76.86
Bra000724.1-P	Field mustard	plastid	76.14	74.01
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	74.45	73.83
CDX90788	Canola	plastid	75.63	73.76
CDY05122	Canola	plastid	75.63	73.64
AT4G10840.1	Thale cress	plastid	75.8	73.56
VIT_00s1429g00010.t01	Wine grape	cytosol	18.27	72.48
CDX94243	Canola	cytosol	33.33	72.16
GSMUA_Achr10P...	Banana	cytosol	69.54	70.38
TraesCS6D01G030400.1	Wheat	cytosol	56.01	67.0
HORVU6Hr1G004990.1	Barley	cytosol	58.38	65.22
Zm00001d054069_P001	Maize	plasma membrane	64.64	64.31
Os02t0109800-01	Rice	plasma membrane	64.3	63.44
EES06120	Sorghum	plastid	64.13	61.93
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	63.79	61.6
TraesCS6B01G037200.1	Wheat	plastid	62.94	61.08
TraesCS6A01G026600.1	Wheat	plastid	62.94	54.39
VIT_14s0066g01280.t01	Wine grape	cytosol	60.58	53.43
VIT_17s0000g08260.t01	Wine grape	cytosol	61.25	49.05
VIT_07s0005g03110.t01	Wine grape	mitochondrion	25.04	22.87

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100246244	wikigene:100246244	MapMan:21.1.1.4.3	ProteinID:CCB58276	ProteinID:CCB58276.1
ncoils:Coil	UniProt:F6HU53	EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0005886	GO:GO:0016020	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100246244
wikigene:LOC100246244	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF202
SMART:SM00028	SUPFAM:SSF48452	TIGR:TC53061	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI00015CD1BA	ArrayExpress:VIT_02s0025g02090	EnsemblPlantsGene:VIT_02s0025g02090	EnsemblPlants:VIT_02s0025g02090.t01	unigene:Vvi.8124	RefSeq:XP_002263593
RefSeq:XP_002263593.1	RefSeq:XP_019072271.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:1865312..1872618

Molecular Weight (calculated)

64578.0 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.295

Length

591 amino acids

Sequence
(BLAST)

001: MPGLVSVKTP PDASPLTISV TEAGSVSESR NSKFASSTPK KTPSPSTSRS RPSPDRKKKP PESPVLDESS LDNPDLGPFL LKLARDAIAS GDGPNKALEY
101: ALRASKSFER CAAEGEPSLD LAMSLHVVAA IYCSLGRFEE AIPVLERAIG VPEVARGADH ALAAFSGYMQ LGDTFSMLGQ VERSIHCYEE GLKIQIEALG
201: ETDPRVGETC RYLAEARVQA MQFDEAESLC KKTLEIHSVH SEPASLEEAA DRRLMALICE AKGDYESALE HLVLASMAMI ANGQDNEVAA IDVSIGNIYL
301: SLCRYDEAIF SYQKALTVFK SSRGDNHPSV ASVFVRLAEL YYKTGKLRES GSYCENALRI YAKPVPGTTA EEIAGGMTEI SAIYESINEP EEALKLLQKA
401: LKLLEDKPGQ QSTIAGIEAR MGVMFYLVGR YGEARSSFES AVAKLRASGE RKSPFFGVVL NQMGLACVQL FKIDEAVELF EEARGILEKE CGPCHQDTIG
501: VYTNLAATYD AMGRVEDAIE ILEYVLKLRE EQLGTANPDF DDEKKRLSEL LKEAGKARNR KAKSLQNLID PNSKRTKKET KRWSGLGFRI G

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.