Factsheet for Os02t0109800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0833800-01
Os02t0148500-01
Os05t0123200-01
Os05t0463300-00
Os09t0132600-01
Os09t0509000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	Os09t0132600-01	AT3G15000.1	21798944
AT4G10840.1	Os09t0509000-01	AT3G15000.1	21798944
AT4G10840.1	Os02t0148500-01	AT3G21175.1	21798944
AT4G10840.1	Os01t0833800-01	AT5G03040.1	21798944
AT4G10840.1	Os05t0123200-01	AT5G03040.1	21798944
AT4G10840.1	Os05t0463300-00	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G004990.1	Barley	cytosol	80.47	91.12
TraesCS6D01G030400.1	Wheat	cytosol	74.46	90.28
Zm00001d054069_P001	Maize	plasma membrane	89.32	90.07
EES06120	Sorghum	plastid	90.82	88.89
TraesCS6B01G037200.1	Wheat	plastid	90.15	88.67
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	88.65	86.76
TraesCS6A01G026600.1	Wheat	plastid	90.48	79.24
Solyc08g008460.2.1	Tomato	cytosol, nucleus	49.25	74.12
GSMUA_Achr10P...	Banana	cytosol	67.95	69.69
KRH60081	Soybean	nucleus	64.61	68.74
KRH41360	Soybean	nucleus	65.44	67.82
CDX94243	Canola	cytosol	30.22	66.3
VIT_02s0025g02090.t01	Wine grape	plastid	63.44	64.3
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	63.94	64.26
PGSC0003DMT400031631	Potato	plastid	64.27	64.06
KRH06445	Soybean	cytosol	58.93	63.72
PGSC0003DMT400014982	Potato	plastid	64.27	63.64
AT4G10840.1	Thale cress	plastid	62.1	61.08
CDX90788	Canola	plastid	61.77	61.06
CDY05122	Canola	plastid	61.77	60.96
Bra000724.1-P	Field mustard	plastid	61.6	60.69
VIT_00s1429g00010.t01	Wine grape	cytosol	14.36	57.72
Os02t0708400-01	Rice	plasma membrane	55.93	47.12
Os02t0820300-01	Rice	mitochondrion	23.87	23.03
Os03t0149400-01	Rice	mitochondrion	18.2	21.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	EntrezGene:4328037	EMBL:AK069014	ProteinID:BAD07830.1	ProteinID:BAD27945.1
ProteinID:BAF07559.1	ProteinID:BAS76601.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0005886	GO:GO:0016020	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlantsGene:Os02g0109800
EnsemblPlants:Os02t0109800-01	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF200
UniProt:Q6Z901	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000023680D	RefSeq:XP_015626774.1	SEG:seg	:	:	:

Description

Tetratricopeptide-like helical domain containing protein. (Os02t0109800-01)

Coordinates

chr2:-:534963..538203

Molecular Weight (calculated)

64948.2 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.305

Length

599 amino acids

Sequence
(BLAST)

001: MPGLAAADNS PPVAAPPPRR LSSPLPRSRA PPSPSPSTSS RAKPRKVAAQ PETDEAALDN PDLGPFLLKQ ARDAMVSGEG GGAARALEFA ERAARALERR
101: GEGAELELAM SLHVAAAIHC GLGRHADAIP VLERAVAVVT PPPPPPPPEG ESSAEEQPPE DQQKGEEWAL AAFSGWMQLG DTHAMLGRMD ESIACYGKGL
201: EIQMAALGER DPRVAETCRY LAEAHVQALQ FDEAEKLCRK ALEIHREHSA PASLEEASDR RLMALILDAK GDYDGALEHL VLASMTMVAN GRDIEVATID
301: VAIGNTYLAL ARFDEAVFSY QKALTVLKSA RGDDHPSVAS VFVRLADLYH RTGRLRESKS YCENALRVYA KPAPGAAPDE VAGGLMEIAA IYEALGDLDE
401: ALKLLQRALK LLEDSPGQWS TVAGIEAQMG VLYYMVGRYA DSRNSFENAV AKLRASGERK SAFFGVLLNQ MGLACVQLFK IDEAAQLFEE ARAVLEQECG
501: ASHPDTLGVY SNLAAIYDAM GRVEDAIEIL EHVLKVREEK LGTANPDVED EKLRLAELLK EAGRSRNRKQ KSLENLFVTN SQRVKKDAGR RWSNFGFRS

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.