Factsheet for Zm00001d014961_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010975_P003
Zm00001d014656_P003
Zm00001d035492_P009
Zm00001d036494_P001
Zm00001d038395_P005
Zm00001d042973_P007
Zm00001d048291_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	Zm00001d048291_P001	AT3G15000.1	21798944
AT4G10840.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT4G10840.1	Zm00001d036494_P001	AT3G21175.1	21798944
AT4G10840.1	Zm00001d010975_P003	AT5G03040.1	21798944
AT4G10840.1	Zm00001d035492_P009	AT5G03040.1	21798944
AT4G10840.1	Zm00001d038395_P005	AT5G03040.1	21798944
AT4G10840.1	Zm00001d042973_P007	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06120	Sorghum	plastid	91.5	91.5
Zm00001d054069_P001	Maize	plasma membrane	88.56	91.25
HORVU6Hr1G004990.1	Barley	cytosol	77.12	89.22
Os02t0109800-01	Rice	plasma membrane	86.76	88.65
TraesCS6D01G030400.1	Wheat	cytosol	71.41	88.46
TraesCS6B01G037200.1	Wheat	plastid	84.8	85.22
TraesCS6A01G026600.1	Wheat	plastid	84.8	75.88
Solyc08g008460.2.1	Tomato	cytosol, nucleus	47.39	72.86
GSMUA_Achr10P...	Banana	cytosol	64.54	67.64
KRH60081	Soybean	nucleus	61.93	67.32
KRH41360	Soybean	nucleus	62.75	66.44
CDX94243	Canola	cytosol	29.41	65.93
VIT_02s0025g02090.t01	Wine grape	plastid	61.6	63.79
VIT_15s0046g00220.t01	Wine grape	cytosol, plastid	61.6	63.26
KRH06445	Soybean	cytosol	57.19	63.18
PGSC0003DMT400031631	Potato	plastid	61.76	62.9
PGSC0003DMT400014982	Potato	plastid	61.76	62.48
CDX90788	Canola	plastid	60.46	61.06
CDY05122	Canola	plastid	60.29	60.79
AT4G10840.1	Thale cress	plastid	60.46	60.76
Bra000724.1-P	Field mustard	plastid	60.29	60.69
VIT_00s1429g00010.t01	Wine grape	cytosol	13.73	56.38
Zm00001d051589_P001	Maize	cytosol	53.92	46.28
Zm00001d017793_P001	Maize	cytosol	52.94	45.44
Zm00001d051893_P001	Maize	mitochondrion	21.9	21.79
Zm00001d027683_P001	Maize	mitochondrion	20.1	21.28

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100191827	MapMan:21.1.1.4.3	ProteinID:AQK67726.1	UniProt:B4FAB6	EMBL:BT034054
EMBL:BT064275	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19959
PANTHER:PTHR19959:SF200	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI00017B6291	EnsemblPlantsGene:Zm00001d014961	EnsemblPlants:Zm00001d014961_P001	EnsemblPlants:Zm00001d014961_T001	SEG:seg	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr5:-:70342381..70345801

Molecular Weight (calculated)

66046.2 Da

IEP (calculated)

5.070

GRAVY (calculated)

-0.320

Length

612 amino acids

Sequence
(BLAST)

001: MPGLAASDNS PPAPAPPPRR LSSPLPRRAP SSPSPSASSR AKPRKPSPSP AAFPTDADDS LDNPDLGPFL LKQARDAMVS SEGGGAARAL EFAERAAMAL
101: ERRGEGAELE LAMSLHVAAA IHCGLGRHAD AIPVLERAVA VVTPPPEAPA DGEAEAEAGA TGGDDHQQLQ PAEPDQRGEE WSLAAFSGWM QLGDTHAMLG
201: RMDDSIACYG KGLEIQMAAL GERDPRVAET CRYLAEAHVQ ALQFDEAEKL CREALQIHRE HSAPASLEEA SDRRLMALVL DAKGDYDGAL EHLVLASMTM
301: VANGRDIEVA TIDVAIGNTY LALARFDEAV FSYQKALTVL KSARGDDHPT VASVYVRLAD LYHRTGRLRE SKSYCENALR VYAKPAPGAA PDEIAGGLME
401: IAAIYEALGD LDEALKLLQR ALRLLEGSPG QWSTVAGIEA QMGVLYYMVG RYADSRNSFE SAVAKLRAIG ERKSAFFGVL LNQMGLACVQ LFKIDEAAQL
501: FEEARAVLEQ ECGASHPDTL GVYSNLAAIY DAMGRVEDAI EILEHVLKVR EEKLGTANPD VDDEKKRLAE LLKEAGRSRN RKQKSLQNLF GTNSQRAKKE
601: AGRRWSNFGF RS

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.