Factsheet for PGSC0003DMT400014982

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004433
PGSC0003DMT400027139
PGSC0003DMT400045333

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10840.1	PGSC0003DMT400004433	AT5G03040.1	21798944
AT4G10840.1	PGSC0003DMT400027139	AT5G03040.1	21798944
AT4G10840.1	PGSC0003DMT400045333	AT5G03040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g008460.2.1	Tomato	cytosol, nucleus	63.8	96.98
PGSC0003DMT400031631	Potato	plastid	87.6	88.19
KRH60081	Soybean	nucleus	73.55	79.04
VIT_02s0025g02090.t01	Wine grape	plastid	76.86	78.68
KRH41360	Soybean	nucleus	73.88	77.34
CDX94243	Canola	cytosol	33.22	73.63
Bra000724.1-P	Field mustard	plastid	72.23	71.88
CDX90788	Canola	plastid	71.9	71.78
CDY05122	Canola	plastid	71.9	71.66
AT4G10840.1	Thale cress	plastid	71.74	71.26
GSMUA_Achr10P...	Banana	cytosol	67.77	70.21
TraesCS6D01G030400.1	Wheat	cytosol	56.03	68.62
HORVU6Hr1G004990.1	Barley	cytosol	58.02	66.35
Zm00001d054069_P001	Maize	plasma membrane	63.47	64.65
Os02t0109800-01	Rice	plasma membrane	63.64	64.27
EES06120	Sorghum	plastid	63.8	63.07
TraesCS6B01G037200.1	Wheat	plastid	63.14	62.73
Zm00001d014961_P001	Maize	extracellular, mitochondrion, plasma membrane	62.48	61.76
TraesCS6A01G026600.1	Wheat	plastid	63.47	56.14
PGSC0003DMT400062960	Potato	cytosol	58.51	48.49
PGSC0003DMT400001405	Potato	cytosol	53.72	45.39
PGSC0003DMT400025136	Potato	plastid	23.64	18.26

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102579976	MapMan:21.1.1.4.3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1A576	PFAM:PF13181	PFAM:PF13374
PFAM:PF13424	EnsemblPlantsGene:PGSC0003DMG400005847	PGSC:PGSC0003DMG400005847	EnsemblPlants:PGSC0003DMT400014982	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR19959	PANTHER:PTHR19959:SF202	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000295A0A6	RefSeq:XP_006352234.1	SEG:seg	:	:

Description

Kinesin light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400005847]

Coordinates

chr8:-:5311720..5314797

Molecular Weight (calculated)

66628.2 Da

IEP (calculated)

5.402

GRAVY (calculated)

-0.406

Length

605 amino acids

Sequence
(BLAST)

001: MPGLVSIKTP PETPALRISI SDENHGRNGP GSSRSEQVNP KTNSPAPRRP PSPSTSRAKP SPDRSSGKKK SSPEKVEIDE SSLDNPDLGP FLLKLARDTI
101: ASGEGPNKAL DYALRAAKSF ERCAVDGEPS LDLAMSLHVV AAIYCSLVRF DEAIPVLETA IKVPEVSRGA DHALAAFSGY MQLGDTYSML GQLDRSIESY
201: KEGLKTQMEA LGDTDPRVAE TCRYLAEAHV QAMQFDEAES LCKKTLEIHR VHSPPASLEE AADRRLMALI CEAKGDYELA LEHLVLANMA MIANGQETEV
301: ATIDVGIGNI YLSLSRFDEA VFSYQKALTV FKSSKGDNHP SVASVYVRLA DLYYKTGKLR ESRSYCENAL RIYAKPVPGT TPEDIASGLM EISAIYELFN
401: EPEEALKLLL KAMKLLEDKP GQQSTIAGIE ARMGVMFYMV GRYEEARSSF ENAVTKLRAS GERKSAFFGV VLNQMGLSSV QLFKIDEAAE LFEEAREILE
501: QECGHCHQDT LGVYSNLAAT YDAIGRVDDA IEILEYVLKL REEKLGTANP DFNDEKKRLA ELLKEAGRSR NKNPKSLENL IDPTSKRTTK KETSSKKWSA
601: FGFRS

Best Arabidopsis Sequence Match ( AT4G10840.1 )
(BLAST)

001: MPAMPGLVSV KTPSDTPPLR VAVPDTQPLS NPPRTPMKKT PSSTPSRSKP SPNRSTGKKD SPTVSSSTAA VIDVDDPSLD NPDLGPFLLK LARDAIASGE
101: GPNKALDYAI RATKSFERCC AAVAPPIPGG SDGGPVLDLA MSLHVLAAIY CSLGRFDEAV PPLERAIQVP DPTRGPDHSL AAFSGHMQLG DTLSMLGQID
201: RSIACYEEGL KIQIQTLGDT DPRVGETCRY LAEAYVQAMQ FNKAEELCKK TLEIHRAHSE PASLEEAADR RLMAIICEAK GDYENALEHL VLASMAMIAS
301: GQESEVASID VSIGNIYMSL CRFDEAVFSY QKALTVFKAS KGETHPTVAS VFVRLAELYH RTGKLRESKS YCENALRIYN KPVPGTTVEE IAGGLTEISA
401: IYESVDEPEE ALKLLQKSMK LLEDKPGQQS AIAGLEARMG VMYYTVGRYE DARNAFESAV TKLRAAGEKS AFFGVVLNQM GLACVQLFKI DEAGELFEEA
501: RGILEQERGP CDQDTLGVYS NLAATYDAMG RIEDAIEILE QVLKLREEKL GTANPDFEDE KKRLAELLKE AGRSRNYKAK SLQNLIDPNA RPPKKESSAK
601: KWPSLGFKF

Arabidopsis Description

KLCR1Protein KINESIN LIGHT CHAIN-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:O81629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.