Factsheet for PGSC0003DMT400062960

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114320.2.1	Tomato	cytosol	98.08	98.08
VIT_17s0000g08260.t01	Wine grape	cytosol	76.3	75.47
GSMUA_Achr10P...	Banana	cytosol	62.74	69.39
KRH63534	Soybean	nucleus	67.4	67.77
EES05647	Sorghum	cytosol	64.38	65.92
Os02t0708400-01	Rice	plasma membrane	63.97	65.68
Zm00001d051589_P001	Maize	cytosol	63.7	65.22
TraesCS6A01G274500.1	Wheat	cytosol	63.01	64.88
HORVU6Hr1G069310.1	Barley	cytosol	62.88	64.83
KRH54405	Soybean	cytosol	66.85	64.81
TraesCS6B01G302000.1	Wheat	cytosol	63.01	64.79
TraesCS6D01G254800.1	Wheat	cytosol	62.88	64.65
Zm00001d017793_P001	Maize	cytosol	63.01	64.52
GSMUA_Achr2P09630_001	Banana	nucleus	62.6	63.92
AT1G27500.2	Thale cress	cytosol	56.58	62.48
CDY27619	Canola	nucleus	55.34	61.3
Bra032832.1-P	Field mustard	nucleus	55.34	61.3
PGSC0003DMT400001405	Potato	cytosol	58.63	59.78
PGSC0003DMT400031631	Potato	plastid	48.49	58.9
PGSC0003DMT400014982	Potato	plastid	48.49	58.51
KRH57064	Soybean	cytosol	58.36	58.36
CDY56191	Canola	cytosol	56.44	57.87
CDX90092	Canola	cytosol, mitochondrion	9.18	53.6
KRH03299	Soybean	cytosol	26.71	48.87
PGSC0003DMT400025136	Potato	plastid	18.49	17.24

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102596186	MapMan:21.1.1.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1C9V3	PFAM:PF13176
PFAM:PF13424	EnsemblPlantsGene:PGSC0003DMG400024501	PGSC:PGSC0003DMG400024501	EnsemblPlants:PGSC0003DMT400062960	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR19959	PANTHER:PTHR19959:SF156	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0002958D1A	RefSeq:XP_006345055.1	RefSeq:XP_015163167.1	SEG:seg	:

Description

Kinesin light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400024501]

Coordinates

chr3:+:54248113..54251370

Molecular Weight (calculated)

79647.4 Da

IEP (calculated)

4.634

GRAVY (calculated)

-0.523

Length

730 amino acids

Sequence
(BLAST)

001: MPGVVMDEIH EVGEIKELKE NGNSTSCKEN EEGGLAPRNG GEEHVGDGVV EPSIEELYEN VCEMQSSDQS PSRHSFGSDG DESRIDSELR HLVGGEMREV
101: EIIEEDEEVQ KPETEDSRSD SGSKKETSDD VKLDNSPSSS MKDPSSGQPK TPSQLVLESE TSAKSNTKGR RASLDKKNGN NTKKVVVGGI SRSRQKSSPA
201: SGSKLKNGTE DSSDSGLDNP DLGPFLLKQA RDLIASGDNS HKALELAHRA AKSFEKCANG KPSLDVVMCL HVTAAIYCNL GQYDDAIPLI EHSLEIPVVE
301: EGQEHALAKF AGYMQLGDTY AMLGQLENSI VSYTTGMEIQ RQVLGDSDPR VGETCRYLAE AHVQALQFDE AEKLCRMALD IHKENGSPPS LEEAADRRLM
401: GLICESKGDH EAALEHLVLA SMAMVANGQE SEVASVDCSI GDTYLSLNRY DEAIFAYQKA LTALKSSKGE NHPAVASVFV RLADLYNRTG KLRDSKSYCE
501: NALRIYGKPI PGIAPEEIAN GLTDVSAIYE SMNELDQALK LLQKALKIYN NAPGQQSTIA GIEAQMGVIY YMLGKYSESY NSFKSAISKL RASGEKKSAF
601: FGVALNQMGL ACVQRYAINE AVELFEESKG ILEQEYGPYH PETLGVYSNL AGTYDAVGRL DEAIEILEYI VGVREEKLGT ANPDVADEKK RLAELLKEAG
701: RVRNRKARSL ENLLDANHRP NTINNDLIIV

Best Arabidopsis Sequence Match ( AT1G27500.1 )
(BLAST)

001: MEGGSVNESH SNADQMFDTT IEELCKNLCE LQSSNQSPSR QSFGSYGDES KIDSDLQHLA LGEMRDIDIL EDEGDEDEVA KPEEFDVKSN SSNLDLEVMP
101: RDMEKQTGKK NVTKSNVGVG GMRKKKVGGT KLQNGNEEPS SENVELARFL LNQARNLVSS GDSTHKALEL THRAAKLFEA SAENGKPCLE WIMCLHVTAA
201: VHCKLKEYNE AIPVLQRSVE IPVVEEGEEH ALAKFAGLMQ LGDTYAMVGQ LESSISCYTE GLNIQKKVLG ENDPRVGETC RYLAEALVQA LRFDEAQQVC
301: ETALSIHRES GLPGSIAEAA DRRLMGLICE TKGDHENALE HLVLASMAMA ANGQESEVAF VDTSIGDSYL SLSRFDEAIC AYQKSLTALK TAKGENHPAV
401: GSVYIRLADL YNRTGKVREA KSYCENALRI YESHNLEISP EEIASGLTDI SVICESMNEV EQAITLLQKA LKIYADSPGQ KIMIAGIEAQ MGVLYYMMGK
501: YMESYNTFKS AISKLRATGK KQSTFFGIAL NQMGLACIQL DAIEEAVELF EEAKCILEQE CGPYHPETLG LYSNLAGAYD AIGRLDDAIK LLGHVVGVRE
601: EKLGTANPVT EDEKRRLAQL LKEAGNVTGR KAKSLKTLID SDLTSSSALR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.