CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54405	Soybean	cytosol	91.32	88.05
VIT_17s0000g08260.t01	Wine grape	cytosol	70.66	69.51
Solyc03g114320.2.1	Tomato	cytosol	68.18	67.81
PGSC0003DMT400062960	Potato	cytosol	67.77	67.4
GSMUA_Achr10P...	Banana	cytosol	59.5	65.45
Zm00001d051589_P001	Maize	cytosol	62.26	63.39
EES05647	Sorghum	cytosol	61.85	62.97
Os02t0708400-01	Rice	plasma membrane	60.74	62.03
TraesCS6B01G302000.1	Wheat	cytosol	60.19	61.55
TraesCS6A01G274500.1	Wheat	cytosol	60.06	61.5
HORVU6Hr1G069310.1	Barley	cytosol	59.78	61.3
TraesCS6D01G254800.1	Wheat	cytosol	59.92	61.27
KRH57064	Soybean	cytosol	61.57	61.23
Zm00001d017793_P001	Maize	cytosol	59.92	61.01
AT1G27500.2	Thale cress	cytosol	55.23	60.67
Bra032832.1-P	Field mustard	nucleus	54.96	60.55
CDY27619	Canola	nucleus	54.96	60.55
GSMUA_Achr2P09630_001	Banana	nucleus	59.5	60.42
KRH56614	Soybean	cytosol	57.85	59.83
KRH60081	Soybean	nucleus	45.59	58.79
KRG93305	Soybean	cytosol	56.61	58.71
KRH06445	Soybean	cytosol	44.49	58.3
KRH41360	Soybean	nucleus	46.28	58.13
CDY56191	Canola	cytosol	56.47	57.58
CDX90092	Canola	cytosol, mitochondrion	9.09	52.8
KRH03299	Soybean	cytosol	28.65	52.13
KRH32172	Soybean	mitochondrion	20.11	23.74
KRH19545	Soybean	mitochondrion	19.7	23.21

Protein Annotations

Gene3D:1.25.40.10	MapMan:21.1.1.4.3	UniProt:A0A0R0K9R9	EMBL:ACUP02002698	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G183400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH63534	ProteinID:KRH63534	ProteinID:KRH63534.1	PFAM:PF13374	PFAM:PF13424	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR19959	PANTHER:PTHR19959:SF156	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0006ED5BFD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:45129065..45133522

Molecular Weight (calculated)

79224.8 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.418

Length

726 amino acids

Sequence
(BLAST)

001: MKELNMPGIV THGVQDEGGS NEMNGDQDSP FKEPLNLVKS PRGGSVSPGR GQGDDGANFG GDGVVEPSIE QLYENVCDMQ SSDQSPSRQS FGSDGDESRI
101: DSELRHLVGG RMREVEIMEE ECGEGKEPEG SSSSEISCAW KIFEALNSQV ESDNTLPKLT SKGRSPLSKA PIPRKNGKPL RKPIGGVTGV KNTKNSPIGK
201: SVSQNRVESM AESALEKPER APVLLKQARD LISSGDNPQK ALDLALQAME LFEKFGNGKP SLELVMCLHV TAAIYCSLGQ YAEAIPILER SIEIPVIGES
301: QQHALAKFAG HMQLGDTYAM LGQLENSIMC YTTGLEVQKQ ILGETDPRVG ETCRYVAEAN VQALQFDEAE RLCQMALDIH KANNSAPSVE EAADRRLMGL
401: ICETKGNHET ALEHLVLASM AMVNNGQEAE VASVDCSIGD TYLSLSRYDE AAFAYQKALT VFKTSKGENH PAVGLVFVRL ADLYNRTGKI RESKSYCENA
501: LKIYENPMPG VPLEEIASGL TNISTIYESM NELEQALKLL QKALEIYSDT PGQQSTIAGI EAQMGVMYYM LGNYSESYNT LKDAISKLRA IGEKKSSFFG
601: IALNQMGLAC VQRYALSEAT ELFEEAKSIL EQEYGPYHPE TLGVYSNLAG TYDAIGRLDD AIQILEYVVN TREEKLGTAN PEVDDEKRRL GELLKEAGRV
701: RSRKARSLEN LLDGNAHAAN NVVIRA

Best Arabidopsis Sequence Match ( AT1G27500.2 )
(BLAST)

001: MKDSCLFEIK KMEGGSVNES HSNADQMFDT TIEELCKNLC ELQSSNQSPS RQSFGSYGDE SKIDSDLQHL ALGEMRDIDI LEDEGDEDEV AKPEEFDVKS
101: NSSNLDLEVM PRDMEKQTGK KNVTKSNVGV GGMRKKKVGG TKLQNGNEEP SSENVELARF LLNQARNLVS SGDSTHKALE LTHRAAKLFE ASAENGKPCL
201: EWIMCLHVTA AVHCKLKEYN EAIPVLQRSV EIPVVEEGEE HALAKFAGLM QLGDTYAMVG QLESSISCYT EGLNIQKKVL GENDPRVGET CRYLAEALVQ
301: ALRFDEAQQV CETALSIHRE SGLPGSIAEA ADRRLMGLIC ETKGDHENAL EHLVLASMAM AANGQESEVA FVDTSIGDSY LSLSRFDEAI CAYQKSLTAL
401: KTAKGENHPA VGSVYIRLAD LYNRTGKVRE AKSYCENALR IYESHNLEIS PEEIASGLTD ISVICESMNE VEQAITLLQK ALKIYADSPG QKIMIAGIEA
501: QMGVLYYMMG KYMESYNTFK SAISKLRATG KKQSTFFGIA LNQMGLACIQ LDAIEEAVEL FEEAKCILEQ ECGPYHPETL GLYSNLAGAY DAIGRLDDAI
601: KLLGHVVGVR EEKLGTANPV TEDEKRRLAQ LLKEAGNVTG RKAKSLKTLI DSDLTSSSAL R

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G27500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.