Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G416000.2 | Wheat | nucleus | 79.85 | 81.28 |
| TraesCS7B01G323600.1 | Wheat | nucleus | 73.8 | 75.13 |
| HORVU7Hr1G097840.6 | Barley | nucleus | 75.57 | 64.1 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 25.19 | 61.73 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 35.77 | 56.8 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 39.8 | 52.15 |
| EER88899 | Sorghum | nucleus | 46.1 | 51.99 |
| Zm00001d014656_P003 | Maize | nucleus | 46.1 | 51.12 |
| Zm00001d036494_P001 | Maize | nucleus | 45.84 | 50.84 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 34.51 | 45.82 |
| Bra014292.1-P | Field mustard | nucleus | 29.72 | 45.38 |
| CDY46552 | Canola | nucleus | 29.47 | 44.83 |
| CDY50073 | Canola | nucleus | 31.49 | 43.4 |
| AT3G21175.1 | Thale cress | nucleus | 32.24 | 43.1 |
| AT1G51600.1 | Thale cress | nucleus | 31.99 | 42.05 |
| GSMUA_Achr10P... | Banana | nucleus | 34.26 | 41.85 |
| TraesCS6A01G118800.2 | Wheat | nucleus | 35.52 | 41.35 |
| CDY19576 | Canola | nucleus | 30.98 | 41.14 |
| Bra031258.1-P | Field mustard | nucleus | 31.74 | 39.25 |
| KRH44616 | Soybean | extracellular, vacuole | 32.49 | 38.62 |
| CDY52949 | Canola | nucleus | 28.21 | 37.84 |
| TraesCS4A01G249400.1 | Wheat | nucleus | 25.69 | 37.78 |
| TraesCS4A01G285900.2 | Wheat | nucleus | 29.97 | 37.3 |
| Bra023900.1-P | Field mustard | nucleus | 31.49 | 34.44 |
| CDY37312 | Canola | cytosol, nucleus, plastid | 31.23 | 33.79 |
| CDY27538 | Canola | nucleus | 30.98 | 31.87 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 |
| InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 |
| ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF296 |
| SMART:SM00401 | SMART:SM00979 | SUPFAM:SSF57716 | InterPro:Tify_dom | EnsemblPlantsGene:TraesCS7A01G423100 | EnsemblPlants:TraesCS7A01G423100.2 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:+:615327592..615333537
Molecular Weight (calculated)
41870.0 Da
IEP (calculated)
4.490
GRAVY (calculated)
-0.756
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQHDGKPYQ PRRGPERPPQ PAEDPPAPAA APAAAPAAAD AVIDHLAAVA AEAEALNASI AAVAAEAEAM NAYEHAQEQE MEEEEEEEEE EEEEEMEEDD
101: DDGEGDGQHG GNGESVPIDA EAAAQAAAAA AAGAPLDPHG AMVSAIVPPT TGNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNPGM GAGASSSTPY
201: SKRLNFPHRV ASLMRFREKR KERNFDKKIR YTVRKEVALR MQRNRGQFTS SKPKPDDGTS ELATADGSPN WGSVEGRPPS AASCHHCGTN AHNTPMMRRG
301: PEGPRTLCNA CGLMWANKGM LRDLSKSTPP SLQMVSTGPN DSQNGNTLSQ QNGNTLSQQN GSTLSQQNGN AAIVPFAEQQ NPAPATDANG HDHGSST
101: DDGEGDGQHG GNGESVPIDA EAAAQAAAAA AAGAPLDPHG AMVSAIVPPT TGNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNPGM GAGASSSTPY
201: SKRLNFPHRV ASLMRFREKR KERNFDKKIR YTVRKEVALR MQRNRGQFTS SKPKPDDGTS ELATADGSPN WGSVEGRPPS AASCHHCGTN AHNTPMMRRG
301: PEGPRTLCNA CGLMWANKGM LRDLSKSTPP SLQMVSTGPN DSQNGNTLSQ QNGNTLSQQN GSTLSQQNGN AAIVPFAEQQ NPAPATDANG HDHGSST
001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
Arabidopsis Description
GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.