Factsheet for AT1G51600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46552	Canola	nucleus	64.9	75.1
Bra014292.1-P	Field mustard	nucleus	62.25	72.31
AT3G21175.1	Thale cress	nucleus	67.55	68.69
CDY52949	Canola	nucleus	63.24	64.53
GSMUA_Achr2P04520_001	Banana	nucleus	29.14	54.32
KRH44616	Soybean	extracellular, vacuole	53.31	48.2
GSMUA_Achr3P05620_001	Banana	nucleus	39.07	47.2
VIT_09s0054g00440.t01	Wine grape	nucleus	44.04	44.48
GSMUA_Achr9P13870_001	Banana	nucleus	43.38	43.23
GSMUA_Achr10P...	Banana	nucleus	40.07	37.23
Os02t0148500-01	Rice	nucleus	39.74	36.59
EER88899	Sorghum	nucleus	41.39	35.51
AT4G24470.3	Thale cress	nucleus	37.09	35.33
Zm00001d036494_P001	Maize	nucleus	41.06	34.64
Zm00001d014656_P003	Maize	nucleus	40.07	33.8
TraesCS6A01G118800.2	Wheat	nucleus	37.75	33.43
TraesCS6D01G108700.2	Wheat	nucleus	37.42	33.04
TraesCS6B01G146800.2	Wheat	nucleus	37.09	32.75
TraesCS7B01G323600.1	Wheat	nucleus	42.05	32.56
HORVU6Hr1G021570.1	Barley	nucleus	36.09	32.34
TraesCS7D01G416000.2	Wheat	nucleus	41.72	32.31
TraesCS7A01G423100.2	Wheat	nucleus	42.05	31.99
HORVU7Hr1G097840.6	Barley	nucleus	42.38	27.35

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:841585	ProteinID:AAG50873.1	ProteinID:AAG52620.1	EMBL:AB119061
ProteinID:AEE32688.1	ProteinID:AEE32689.1	ArrayExpress:AT1G51600	EnsemblPlantsGene:AT1G51600	RefSeq:AT1G51600	TAIR:AT1G51600
RefSeq:AT1G51600-TAIR-G	EnsemblPlants:AT1G51600.1	TAIR:AT1G51600.1	EMBL:AY045906	EMBL:AY150395	Unigene:At.26180
InterPro:CCT_domain	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	RefSeq:NP_564593.1	RefSeq:NP_974002.1	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	UniProt:Q8H1G0
SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI00000ADA85	Symbol:ZML2
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:	:	:

Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]

Coordinates

chr1:+:19132221..19135630

Molecular Weight (calculated)

33131.8 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.757

Length

302 amino acids

Sequence
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.