Factsheet for AT4G24470.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56573	Canola	nucleus	66.25	68.4
Bra013805.1-P	Field mustard	nucleus	57.1	67.29
CDY57283	Canola	nucleus	21.77	64.49
CDX92633	Canola	nucleus	48.58	59.46
CDY61010	Canola	nucleus	57.73	59.03
CDY11013	Canola	nucleus	46.69	56.7
Bra019227.1-P	Field mustard	nucleus	43.85	53.26
KRH72475	Soybean	nucleus	45.11	46.13
KRH16867	Soybean	nucleus	44.48	45.93
KRH52967	Soybean	nucleus	42.9	44.74
KRH62254	Soybean	nucleus	42.59	43.69
VIT_18s0001g07720.t01	Wine grape	nucleus	40.06	43.2
AT3G21175.1	Thale cress	nucleus	35.02	37.37
AT1G51600.1	Thale cress	nucleus	35.33	37.09
OQU83708	Sorghum	cytosol	13.56	33.08
GSMUA_Achr10P...	Banana	nucleus	27.44	32.58
GSMUA_Achr7P08720_001	Banana	cytosol	12.93	25.15

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:828549	ProteinID:AEE84911.1	ArrayExpress:AT4G24470	EnsemblPlantsGene:AT4G24470
RefSeq:AT4G24470	TAIR:AT4G24470	RefSeq:AT4G24470-TAIR-G	EnsemblPlants:AT4G24470.3	TAIR:AT4G24470.3	InterPro:CCT_domain
UniProt:F4JQX4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	RefSeq:NP_001190821.1	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00344	PFscan:PS50114
PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401	SMART:SM00979
SUPFAM:SSF57716	Symbol:TIFY1	InterPro:Tify_dom	UniParc:UPI0001E92F37	Symbol:ZIM	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	:	:	:	:	:

Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]

Coordinates

chr4:+:12645564..12647864

Molecular Weight (calculated)

34224.9 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.569

Length

317 amino acids

Sequence
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPVS SYKYHPDDGG SVADAANNLN TEAASVEEHT
301: SMVSLANGDN SNLLGDH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.