Factsheet for Bra019227.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92633	Canola	nucleus	66.28	66.8
CDY11013	Canola	nucleus	65.52	65.52
Bra013805.1-P	Field mustard	nucleus	53.64	52.04
AT4G24470.3	Thale cress	nucleus	53.26	43.85
KRH16867	Soybean	nucleus	44.83	38.11
KRH72475	Soybean	nucleus	44.44	37.42
KRH52967	Soybean	nucleus	42.91	36.84
KRH62254	Soybean	nucleus	43.3	36.57
VIT_18s0001g07720.t01	Wine grape	nucleus	40.61	36.05
Bra014292.1-P	Field mustard	nucleus	35.25	35.38
Bra031258.1-P	Field mustard	nucleus	39.08	31.78
OQU83708	Sorghum	cytosol	15.33	30.77
GSMUA_Achr10P...	Banana	nucleus	31.42	30.71
Bra023900.1-P	Field mustard	nucleus	39.46	28.37
GSMUA_Achr7P08720_001	Banana	cytosol	13.79	22.09

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra019227	EnsemblPlants:Bra019227.1	EnsemblPlants:Bra019227.1-P	InterPro:CCT_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M4DRT4
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI0002540FD2	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:

Description

AT4G24470 (E=5e-097) ZIM, TIFY1 | TIFY1; transcription factor

Coordinates

chrA03:+:25610003..25611840

Molecular Weight (calculated)

28335.0 Da

IEP (calculated)

6.413

GRAVY (calculated)

-0.568

Length

261 amino acids

Sequence
(BLAST)

001: MFPQLEINPY QIGSTLGEDH VSASASRIPY IDEIANHPES IYAASGLIPD GSQLLDSPAP EGANQLTVSY RGQVYVFDSV GPEKVDAVLL LLGGSTAAPQ
101: GMEIAQQNHH MPVVEHQSRC SHPHRAQSLD RFRKKRSARC FANQVRYGVR QEVALRMPRN KGQFSSATTA DGAYNSGTDQ DNAHDDGRPE LSCTHCGVSS
201: TCTPMMRRGP SGPRTLCNAC GLFWVSRGTL RDLSKKTEDN QVAMIEPGEL GSDADANNSN Y

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.