Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010544.1-P | |
| Bra017974.1-P | |
| Bra023900.1-P | |
| Bra031258.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G21175.1 | Bra023900.1-P | AT3G21175.1 | 21798944 |
| AT3G21175.1 | Bra031258.1-P | AT3G21175.1 | 21798944 |
| AT3G21175.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT3G21175.1 | Bra010544.1-P | AT4G23770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19576 | Canola | nucleus | 86.29 | 92.64 |
| AT3G21175.1 | Thale cress | nucleus | 56.7 | 61.28 |
| Bra014292.1-P | Field mustard | nucleus | 47.98 | 59.23 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 26.17 | 51.85 |
| Bra023900.1-P | Field mustard | nucleus | 53.89 | 47.66 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 42.06 | 45.15 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 34.89 | 44.8 |
| KRH44616 | Soybean | extracellular, vacuole | 43.3 | 41.62 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 38.32 | 40.59 |
| Bra013805.1-P | Field mustard | nucleus | 33.96 | 40.52 |
| Bra019227.1-P | Field mustard | nucleus | 31.78 | 39.08 |
| GSMUA_Achr10P... | Banana | nucleus | 37.38 | 36.92 |
| Os02t0148500-01 | Rice | nucleus | 36.76 | 35.98 |
| EER88899 | Sorghum | nucleus | 37.69 | 34.38 |
| TraesCS7B01G323600.1 | Wheat | nucleus | 40.19 | 33.08 |
| Zm00001d014656_P003 | Maize | nucleus | 36.45 | 32.68 |
| TraesCS7D01G416000.2 | Wheat | nucleus | 39.56 | 32.56 |
| Zm00001d036494_P001 | Maize | nucleus | 36.14 | 32.4 |
| TraesCS6A01G118800.2 | Wheat | nucleus | 33.96 | 31.96 |
| TraesCS7A01G423100.2 | Wheat | nucleus | 39.25 | 31.74 |
| HORVU6Hr1G021570.1 | Barley | nucleus | 33.02 | 31.45 |
| TraesCS6D01G108700.2 | Wheat | nucleus | 33.33 | 31.29 |
| TraesCS6B01G146800.2 | Wheat | nucleus | 33.02 | 30.99 |
| HORVU7Hr1G097840.6 | Barley | nucleus | 39.56 | 27.14 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EnsemblPlantsGene:Bra031258 | EnsemblPlants:Bra031258.1 | EnsemblPlants:Bra031258.1-P | InterPro:CCT_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | UniProt:M4ER35 |
| PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 | ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 |
| PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF282 | SMART:SM00401 | SUPFAM:SSF57716 | InterPro:Tify_dom |
| UniParc:UPI0002547917 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : |
Description
AT1G51600 (E=2e-100) ZML2, TIFY2A | TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding
Coordinates
chrA05:-:16617341..16618838
Molecular Weight (calculated)
35393.7 Da
IEP (calculated)
6.945
GRAVY (calculated)
-0.784
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDGSLHGN NGGMHNGGDE LPMHVQYEHH GMMDEHVDDG MNGGLETDVP SHLVNSSDHR GEVVDRGGEN GDQLTLSYQG QVYVFDHVLP EKVTLTSSCN
101: FSSLMSALLK LLLQVQAVLL LLGGREVPQT VPTTVGSPHQ NNRGLSGTPQ RFSAPQRQAS LLRFREKRKG RNFDKTIRYT VRKEVALRMQ RKKGQFTSAK
201: SSNEESALTG PDWGSGQSWA LEGCETQKPE ALCRHCGTSE NSTPMMRRGP EGPRTLCNAC GLMWANKGAL RDLSKGPPPQ ITRNLPANKN DESNLEADQM
301: MVVAGDNSNS NWEKHCRQEK M
101: FSSLMSALLK LLLQVQAVLL LLGGREVPQT VPTTVGSPHQ NNRGLSGTPQ RFSAPQRQAS LLRFREKRKG RNFDKTIRYT VRKEVALRMQ RKKGQFTSAK
201: SSNEESALTG PDWGSGQSWA LEGCETQKPE ALCRHCGTSE NSTPMMRRGP EGPRTLCNAC GLMWANKGAL RDLSKGPPPQ ITRNLPANKN DESNLEADQM
301: MVVAGDNSNS NWEKHCRQEK M
001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
Arabidopsis Description
GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.