Factsheet for GSMUA_Achr3P05620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P14370_001
GSMUA_Achr1P28110_001
GSMUA_Achr2P04520_001
GSMUA_Achr3P05620_001
GSMUA_Achr5P28120_001
GSMUA_Achr6P35730_001
GSMUA_Achr7P14640_001
GSMUA_Achr8P05350_001
GSMUA_Achr8P26280_001
GSMUA_Achr9P13870_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	GSMUA_Achr10P...	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr1P14370_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr1P28110_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr6P35730_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr7P14640_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr8P05350_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr8P26280_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_AchrUn_...	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr10P...	AT2G02560.1	21798944
AT1G51600.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr5P28120_001	AT5G58575.1	21798944
AT3G21175.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04520_001	Banana	nucleus	39.2	60.49
GSMUA_Achr9P13870_001	Banana	nucleus	69.6	57.43
VIT_09s0054g00440.t01	Wine grape	nucleus	53.2	44.48
GSMUA_Achr7P01650_001	Banana	nucleus	43.2	44.26
Os02t0148500-01	Rice	nucleus	56.0	42.68
Bra014292.1-P	Field mustard	nucleus	43.6	41.92
EER88899	Sorghum	nucleus	58.4	41.48
CDY46552	Canola	nucleus	43.2	41.38
GSMUA_Achr10P...	Banana	nucleus	53.2	40.92
Zm00001d014656_P003	Maize	nucleus	57.2	39.94
AT3G21175.1	Thale cress	nucleus	47.2	39.73
AT1G51600.1	Thale cress	nucleus	47.2	39.07
Zm00001d036494_P001	Maize	nucleus	55.2	38.55
CDY50073	Canola	nucleus	44.4	38.54
TraesCS7D01G416000.2	Wheat	nucleus	58.8	37.69
TraesCS7B01G323600.1	Wheat	nucleus	58.8	37.69
CDY19576	Canola	nucleus	44.8	37.46
CDY52949	Canola	nucleus	43.6	36.82
TraesCS7A01G423100.2	Wheat	nucleus	56.8	35.77
TraesCS6A01G118800.2	Wheat	nucleus	48.4	35.48
KRH44616	Soybean	extracellular, vacuole	47.2	35.33
HORVU6Hr1G021570.1	Barley	nucleus	47.2	35.01
Bra031258.1-P	Field mustard	nucleus	44.8	34.89
GSMUA_Achr10P...	Banana	nucleus	37.2	34.83
TraesCS6D01G108700.2	Wheat	nucleus	47.6	34.8
TraesCS6B01G146800.2	Wheat	nucleus	47.2	34.5
CDY37312	Canola	cytosol, nucleus, plastid	46.4	31.61
Bra023900.1-P	Field mustard	nucleus	45.2	31.13
HORVU7Hr1G097840.6	Barley	nucleus	57.2	30.56
CDY27538	Canola	nucleus	46.4	30.05
GSMUA_Achr7P08720_001	Banana	cytosol	17.2	26.38

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G05620_001	EnsemblPlants:GSMUA_Achr3P05620_001
EnsemblPlants:GSMUA_Achr3T05620_001	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M0SC30
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI000294B426	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

GATA transcription factor 24 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05620_001]

Coordinates

chr3:+:3739400..3742749

Molecular Weight (calculated)

27077.0 Da

IEP (calculated)

7.252

GRAVY (calculated)

-0.512

Length

250 amino acids

Sequence
(BLAST)

001: MEEAVDGEGV EGDAPADHGD LGNPHALVVP PVASNQLTLS FHREVYVFDS VSPEKVQAVL LLLGGREIAT STASIESATN PLDKRLNFPH RVASLMRFKE
101: KRKERNFDKK IRYAVRKEVA LRMQRNRGQF TTSKSNPDVA TLGATNCEGT QCWGTIEGRP PSAALCHHCG INSKSTPMMR RGPDGPRTLC NACGLMWANK
201: GTLRDLSKNP SLLTQSDPLE GSEMNGASAP VAEELLPHAD AANDHHSSSL

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.