CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77337
CDX90021
CDY03047
CDY09359
CDY19576
CDY27538
CDY37312
CDY41685
CDY45206
CDY50073
CDY65780
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	CDX90021	AT1G01260.1	21798944
AT1G51600.1	CDY03047	AT2G02560.1	21798944
AT1G51600.1	CDY09359	AT2G02560.1	21798944
AT1G51600.1	CDY41685	AT2G02560.1	21798944
AT1G51600.1	CDY45206	AT2G02560.1	21798944
AT1G51600.1	CDX77337	AT2G47450.1	21798944
AT1G51600.1	CDY70592	AT2G47450.1	21798944
AT1G51600.1	CDY19576	AT3G21175.1	21798944
AT1G51600.1	CDY27538	AT3G21175.1	21798944
AT1G51600.1	CDY37312	AT3G21175.1	21798944
AT1G51600.1	CDY50073	AT3G21175.1	21798944
AT1G51600.1	CDY65780	AT5G58575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014292.1-P	Field mustard	nucleus	67.23	76.54
CDY46552	Canola	nucleus	66.55	75.48
AT1G51600.1	Thale cress	nucleus	64.53	63.24
CDY50073	Canola	nucleus	57.43	59.03
CDY19576	Canola	nucleus	52.36	51.84
GSMUA_Achr2P04520_001	Banana	nucleus	25.34	46.3
GSMUA_Achr3P05620_001	Banana	nucleus	36.82	43.6
KRH44616	Soybean	extracellular, vacuole	47.64	42.22
VIT_09s0054g00440.t01	Wine grape	nucleus	42.57	42.14
GSMUA_Achr9P13870_001	Banana	nucleus	41.55	40.59
CDY37312	Canola	cytosol, nucleus, plastid	48.65	39.24
CDY27538	Canola	nucleus	51.01	39.12
CDX92633	Canola	nucleus	33.78	38.61
CDY11013	Canola	nucleus	33.78	38.31
CDY57283	Canola	nucleus	13.51	37.38
GSMUA_Achr10P...	Banana	nucleus	37.84	34.46
Os02t0148500-01	Rice	nucleus	38.18	34.45
CDY56573	Canola	nucleus	34.8	33.55
CDY61010	Canola	nucleus	34.46	32.9
EER88899	Sorghum	nucleus	37.84	31.82
TraesCS6A01G118800.2	Wheat	nucleus	35.81	31.09
Zm00001d014656_P003	Maize	nucleus	37.5	31.01
Zm00001d036494_P001	Maize	nucleus	37.16	30.73
TraesCS6D01G108700.2	Wheat	nucleus	34.46	29.82
TraesCS6B01G146800.2	Wheat	nucleus	34.46	29.82
HORVU6Hr1G021570.1	Barley	nucleus	33.78	29.67
TraesCS7D01G416000.2	Wheat	nucleus	37.84	28.72
TraesCS7B01G323600.1	Wheat	nucleus	37.5	28.46
TraesCS7A01G423100.2	Wheat	nucleus	37.84	28.21
HORVU7Hr1G097840.6	Barley	nucleus	37.5	23.72

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078IU19	UniProt:A0A078IU19	InterPro:CCT_domain	EnsemblPlants:CDY52949
ProteinID:CDY52949	ProteinID:CDY52949.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00008209001	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402
InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI0004EDF3C3	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:

Description

BnaC03g77870DBnaC03g77870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU19]

Coordinates

chrLK033145:+:28407..30363

Molecular Weight (calculated)

32366.7 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.755

Length

296 amino acids

Sequence
(BLAST)

001: MDEDVLHGSN GRTHIAETQD PMHHVHYGHH ALQHIHNGSG MVDDHADGSG GGVDTDVPSH PGNITDNRGE VVDRGSEQGD QLTLSFQGQV YVFDSVLPEK
101: VQAVLLLLGG REVPQAPPTG IGASHQNNRV LGLPGTPQRF SMPQRLASLV RFREKRKERN FDKKIRYTVR KEVALRMQRN KGQFTSAKSN NGEAAADGSS
201: WESSQTWAIE GSEAQDQEIS CRHCGIGEKS TPMMRRGPEG PRTLCNACGL IDLSRGAPQT SQNLQVNNEV SNMQEEANLE ADQMMVTVAN DISNSQ

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.