CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61010	Canola	nucleus	69.06	68.39
AT4G24470.3	Thale cress	nucleus	68.4	66.25
CDY57283	Canola	nucleus	22.48	64.49
CDX92633	Canola	nucleus	49.84	59.07
CDY11013	Canola	nucleus	49.84	58.62
KRH52967	Soybean	nucleus	44.95	45.39
VIT_18s0001g07720.t01	Wine grape	nucleus	42.02	43.88
KRH62254	Soybean	nucleus	43.32	43.04
KRH16867	Soybean	nucleus	43.0	43.0
KRH72475	Soybean	nucleus	43.0	42.58
CDY46552	Canola	nucleus	33.88	39.85
CDY50073	Canola	nucleus	35.18	37.5
CDY19576	Canola	nucleus	34.85	35.79
CDY52949	Canola	nucleus	33.55	34.8
GSMUA_Achr10P...	Banana	nucleus	27.69	31.84
OQU83708	Sorghum	cytosol	13.36	31.54
CDY37312	Canola	cytosol, nucleus, plastid	33.88	28.34
CDY27538	Canola	nucleus	34.2	27.2
GSMUA_Achr7P08720_001	Banana	cytosol	12.38	23.31

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078J0N9	UniProt:A0A078J0N9	InterPro:CCT_domain	EnsemblPlants:CDY56573
ProteinID:CDY56573	ProteinID:CDY56573.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00019753001	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401
SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0004EE3F48	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

BnaC01g41520DBnaC01g41520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0N9]

Coordinates

chrLK033500:-:8791..11125

Molecular Weight (calculated)

33249.8 Da

IEP (calculated)

6.369

GRAVY (calculated)

-0.596

Length

307 amino acids

Sequence
(BLAST)

001: MFGHHTQPEI NPNQIGSSSA TVGEDHASAS AGHIPYDDMD DIPHPDSIYA ASDLIPDGSH LVPHRSEGSE LLGSRPMEGA TQLTISFRGQ VYVFDAVGPE
101: KVDAVLSLLG GSTELSSVQQ GMELAPQNHM PAVVEYQNRY SHPQRAQSLD RFRKKRNARC FEKKVRYGVR QEVALRMARN KGQFTSAKVT EGAYNSGTDQ
201: DSAQDDSRPE ILCTHCGISS SCTPMMRRGP SGPRTLCNAC GLFWTNRGTL RDLSKRTEEN QMAIIKPVEG GSVSDANNSN CEPATVEGHA ALVSLANGDQ
301: SNLLGNH

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.