CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92633	Canola	nucleus	55.14	22.78
CDY11013	Canola	nucleus	55.14	22.61
CDY56573	Canola	nucleus	64.49	22.48
CDY61010	Canola	nucleus	64.49	22.26
AT4G24470.3	Thale cress	nucleus	64.49	21.77
GSMUA_Achr7P08720_001	Banana	cytosol	28.97	19.02
OQU83708	Sorghum	cytosol	22.43	18.46
KRH16867	Soybean	nucleus	48.6	16.94
VIT_18s0001g07720.t01	Wine grape	nucleus	45.79	16.67
KRH72475	Soybean	nucleus	47.66	16.45
KRH52967	Soybean	nucleus	44.86	15.79
KRH62254	Soybean	nucleus	44.86	15.53
CDY19576	Canola	nucleus	42.06	15.05
CDY50073	Canola	nucleus	39.25	14.58
CDY46552	Canola	nucleus	34.58	14.18
CDY52949	Canola	nucleus	37.38	13.51
GSMUA_Achr10P...	Banana	nucleus	30.84	12.36
CDY37312	Canola	cytosol, nucleus, plastid	39.25	11.44
CDY27538	Canola	nucleus	41.12	11.4

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078J216	UniProt:A0A078J216	EnsemblPlants:CDY57283	ProteinID:CDY57283
ProteinID:CDY57283.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00020756001	InterPro:IPR000679	InterPro:IPR013088
PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401
SUPFAM:SSF57716	UniParc:UPI0004EEB341	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:

Description

BnaC06g41200DBnaC06g41200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J216]

Coordinates

chrLK033561:-:17416..18189

Molecular Weight (calculated)

11165.7 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.671

Length

107 amino acids

Sequence
(BLAST)

001: MPRNKGQLSS AGAYNSGTDQ DSAQDDSRPE ISCTHCGVSS TCTPMMRRGP SGPRTLCNAC GLFWAARGEL GSDADANSSN YEPATVEEHS ALVSLANGDN
101: SNMLGNH

Best Arabidopsis Sequence Match ( AT4G24470.1 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.