Factsheet for GSMUA_Achr7P08720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04520_001	Banana	nucleus	31.9	32.1
CDY57283	Canola	nucleus	19.02	28.97
OQU83708	Sorghum	cytosol	14.11	17.69
GSMUA_Achr3P05620_001	Banana	nucleus	26.38	17.2
GSMUA_Achr10P...	Banana	nucleus	31.29	15.69
CDX92633	Canola	nucleus	23.31	14.67
KRH52967	Soybean	nucleus	26.99	14.47
GSMUA_Achr7P01650_001	Banana	nucleus	21.47	14.34
Bra013805.1-P	Field mustard	nucleus	23.31	14.13
GSMUA_Achr9P13870_001	Banana	nucleus	25.77	13.86
CDY11013	Canola	nucleus	22.09	13.79
Bra019227.1-P	Field mustard	nucleus	22.09	13.79
KRH16867	Soybean	nucleus	25.77	13.68
KRH62254	Soybean	nucleus	25.77	13.59
VIT_03s0038g00480.t01	Wine grape	nucleus	25.15	13.58
KRH72475	Soybean	nucleus	25.77	13.55
AT4G24470.3	Thale cress	nucleus	25.15	12.93
VIT_18s0001g07720.t01	Wine grape	nucleus	23.31	12.93
Solyc10g047640.1.1	Tomato	nucleus	23.93	12.54
CDY56573	Canola	nucleus	23.31	12.38
GSMUA_Achr10P...	Banana	nucleus	20.25	12.36
CDY61010	Canola	nucleus	23.31	12.26
PGSC0003DMT400083773	Potato	nucleus	23.31	11.59
Solyc01g106030.2.1	Tomato	nucleus	22.7	11.35

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr7G08720_001	EnsemblPlants:GSMUA_Achr7P08720_001	EnsemblPlants:GSMUA_Achr7T08720_001
InterPro:IPR000679	InterPro:IPR013088	UniProt:M0TFW2	PFAM:PF00320	ScanProsite:PS00344	PANTHER:PTHR10071
PANTHER:PTHR10071:SF282	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00029570E7	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G08720_001]

Coordinates

chr7:+:7008434..7012432

Molecular Weight (calculated)

18170.3 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.009

Length

163 amino acids

Sequence
(BLAST)

001: MGGAATSDAN QNWCISVHQI FIVSIFQCHH CGISAKSTPM MHRGPDGPRT LCNACGLVWA NKGTMRDLAK NPSPAIPNAL PAQKEGGLNK VMYHSHPTMW
101: LNVEKYIYIL TSKVPLTRKR RFRHIKGQCD MCRSVEILHC FHVSLLCQSY CLWAILAASS IAF

Best Arabidopsis Sequence Match ( AT3G21175.1 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG QFTSAKSSND DSGSTGSDWG
201: SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.