Factsheet for PGSC0003DMT400083773

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106030.2.1	Tomato	nucleus	51.83	52.15
VIT_03s0038g00480.t01	Wine grape	nucleus	41.77	45.36
GSMUA_Achr10P...	Banana	nucleus	29.88	36.7
OQU83708	Sorghum	cytosol	12.2	30.77
PGSC0003DMT400024207	Potato	nucleus	32.93	30.59
PGSC0003DMT400027729	Potato	nucleus	30.18	26.4
GSMUA_Achr7P08720_001	Banana	cytosol	11.59	23.31

Protein Annotations

EntrezGene:102587723	MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M1D739	PFAM:PF00320	PFAM:PF06200
PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400033576	PGSC:PGSC0003DMG400033576	EnsemblPlants:PGSC0003DMT400083773	ScanProsite:PS00344	PFscan:PS50114
PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF209	SMART:SM00401	SMART:SM00979
SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000294C142	RefSeq:XP_006351719.2	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400033576]

Coordinates

chr1:+:82686049..82692942

Molecular Weight (calculated)

35000.6 Da

IEP (calculated)

6.585

GRAVY (calculated)

-0.779

Length

328 amino acids

Sequence
(BLAST)

001: MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AGGGGGGGGS GGGIESMDNP TPHIRYDQHH HSHSHALHNG GAGGSMEMNG VEGVSHNALY
101: GPSSEIVPTA GSGASDQLTL SFQGEVYVFD AVSPEKVQAV LLLLGGYEVP PGIPAVNVAP QSQRASGDFP GRLNQPQRAA SLNRFREKRK ERCFDKKIRY
201: TVRKEVAMRM QRKKGQFTSA KSIPDEVGSS AEWNEGSGQE EQETSCRHCN ISSKSTPMMR RGPAGPRSLC NACGLKWANK GILRDLSKVP APGAQDQTAK
301: PSEQSNGEPN GSDAMAAIIT PDDNNPVG

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.