Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g00480.t01 | Wine grape | nucleus | 47.91 | 49.34 |
| Solyc01g106030.2.1 | Tomato | nucleus | 50.16 | 47.85 |
| GSMUA_Achr10P... | Banana | nucleus | 32.15 | 37.45 |
| OQU83708 | Sorghum | cytosol | 13.83 | 33.08 |
| Solyc01g106040.2.1 | Tomato | nucleus | 35.05 | 28.84 |
| GSMUA_Achr7P08720_001 | Banana | cytosol | 12.54 | 23.93 |
| Solyc04g076530.2.1 | Tomato | nucleus | 33.44 | 16.46 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | InterPro:CCT_domain | GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 |
| InterPro:IPR000679 | InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | UniProt:K4D026 | PFAM:PF00320 |
| PFAM:PF06200 | PFAM:PF06203 | ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 | PFscan:PS51320 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF209 | SMART:SM00401 | SMART:SM00979 | SUPFAM:SSF57716 | EnsemblPlantsGene:Solyc10g047640.1 |
| EnsemblPlants:Solyc10g047640.1.1 | InterPro:Tify_dom | UniParc:UPI0002769D6F | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg |
Description
No Description!
Coordinates
chr10:+:41529218..41541677
Molecular Weight (calculated)
32829.0 Da
IEP (calculated)
5.585
GRAVY (calculated)
-0.596
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAAVQREGQ QQTHFADDGD DDDVDVAGGG GGGGMESIED SSHHIGYDHN HHGLHNGTDG TIATTAAALN GVEGVPHNSL YVPGSEMVGG GSSDQLTLSF
101: RGEVFVYDAV SPEKVQAVLL LLGGYEVPAG IPTVNMASQS HRASSEGPGR LNQPQRAASL SRFREKRKER CFDKKIRYTV RKEVALRMQR KKGQFTSSKT
201: VSDEAASSSA EGNAGSSQEE QETLCRHCGT SSKSTPMMRR GPAGPRSLCN ACGLTWANKG ILRDLSKVST TGAQELSVKS SEQNGEADGS DVMAAAGIIT
301: SDDENMVLPS E
101: RGEVFVYDAV SPEKVQAVLL LLGGYEVPAG IPTVNMASQS HRASSEGPGR LNQPQRAASL SRFREKRKER CFDKKIRYTV RKEVALRMQR KKGQFTSSKT
201: VSDEAASSSA EGNAGSSQEE QETLCRHCGT SSKSTPMMRR GPAGPRSLCN ACGLTWANKG ILRDLSKVST TGAQELSVKS SEQNGEADGS DVMAAAGIIT
301: SDDENMVLPS E
001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
Arabidopsis Description
GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.