CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67912
CDX76680
CDX77644
CDX81662
CDX83145
CDX87735
CDX89163
CDX90932
CDY03235
CDY11468
CDY18013
CDY21896
CDY22060
CDY24170
CDY33461
CDY33749
CDY34012
CDY35152
CDY36943
CDY43957
CDY53998
CDY68624
CDY68868

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	CDX81662	AT1G14687.1	21798944
AT2G02560.1	CDY33749	AT1G14687.1	21798944
AT2G02560.1	CDY24170	AT3G47620.1	21798944
AT2G02560.1	CDY36943	AT3G47620.1	21798944
AT2G02560.1	CDX67912	AT3G62980.1	18550827
AT2G02560.1	CDX76680	AT3G62980.1	18550827
AT2G02560.1	CDX89163	AT3G62980.1	18550827
AT2G02560.1	CDY11468	AT3G62980.1	18550827
AT2G02560.1	CDY53998	AT3G62980.1	18550827
AT2G02560.1	CDY68868	AT3G62980.1	18550827
AT2G02560.1	CDX90932	AT4G02570.1	15208391
AT2G02560.1	CDY18013	AT4G02570.1	15208391
AT2G02560.1	CDY21896	AT4G02570.1	15208391
AT2G02560.1	CDY22060	AT4G02570.1	15208391
AT2G02560.1	CDX90932	AT4G02570.1	15208392
AT2G02560.1	CDY18013	AT4G02570.1	15208392
AT2G02560.1	CDY21896	AT4G02570.1	15208392
AT2G02560.1	CDY22060	AT4G02570.1	15208392
AT2G02560.1	CDX90932	AT4G02570.1	18550827
AT2G02560.1	CDY18013	AT4G02570.1	18550827
AT2G02560.1	CDY21896	AT4G02570.1	18550827
AT2G02560.1	CDY22060	AT4G02570.1	18550827
AT2G02560.1	CDX83145	AT4G08150.1	21798944
AT2G02560.1	CDY34012	AT4G08150.1	21798944
AT2G02560.1	CDY68624	AT4G08150.1	21798944
AT2G02560.1	CDX77644	AT5G46210.1	16844902
AT2G02560.1	CDX87735	AT5G46210.1	16844902
AT2G02560.1	CDY03235	AT5G46210.1	16844902
AT2G02560.1	CDY33461	AT5G46210.1	16844902
AT2G02560.1	CDY35152	AT5G46210.1	16844902
AT2G02560.1	CDY43957	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45206	Canola	cytosol	96.25	97.28
CDY09359	Canola	cytosol	95.52	96.3
CDY41685	Canola	cytosol	95.68	95.45
AT2G02560.1	Thale cress	cytosol	94.3	94.91
VIT_12s0035g01840.t01	Wine grape	cytosol	81.42	82.02
KRH51281	Soybean	endoplasmic reticulum	81.17	81.84
KRH01878	Soybean	endoplasmic reticulum	81.17	81.77
Solyc01g103010.2.1	Tomato	cytosol	78.81	79.46
GSMUA_Achr10P...	Banana	cytosol	77.02	76.77
EES06334	Sorghum	cytosol	75.63	76.13
HORVU5Hr1G011280.4	Barley	cytosol, endoplasmic reticulum, peroxisome	39.28	75.79
Os02t0167700-01	Rice	plasma membrane	75.06	75.62
TraesCS5D01G057500.1	Wheat	cytosol	74.65	75.14
TraesCS5A01G046900.1	Wheat	golgi	74.57	75.06
TraesCS5B01G051900.1	Wheat	cytosol	74.49	74.98
TraesCS2D01G036800.1	Wheat	cytosol	74.08	74.57
HORVU2Hr1G005650.6	Barley	cytosol	74.0	74.49
TraesCS2A01G037800.2	Wheat	cytosol, unclear	74.0	74.49
TraesCS2B01G051000.1	Wheat	cytosol, golgi	73.76	74.24
KRH75237	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	19.56	73.85
HORVU0Hr1G010280.1	Barley	plastid	5.95	68.87
HORVU5Hr1G059250.1	Barley	cytosol	3.91	68.57
TraesCS5D01G419100.1	Wheat	nucleus	57.46	66.45
Os02t0169800-01	Rice	cytosol, plasma membrane	16.63	64.97
Zm00001d049167_P001	Maize	plastid	14.43	63.9
HORVU1Hr1G041480.1	Barley	cytosol	4.56	62.92
HORVU7Hr1G036210.1	Barley	endoplasmic reticulum, plastid	3.59	62.86
TraesCS5A01G409300.1	Wheat	cytosol	47.6	46.76
HORVU1Hr1G041490.1	Barley	cytosol	2.04	43.86
Zm00001d050298_P001	Maize	cytosol	15.48	39.18
Zm00001d027974_P002	Maize	plastid	16.54	36.45
Zm00001d046662_P001	Maize	cytosol	4.81	15.01

Protein Annotations

EnsemblPlants:CDY03047	EnsemblPlantsGene:GSBRNA2T00115379001	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold	InterPro:TATA-bd_TIP120
ncoils:Coil	PANTHER:PTHR12696	PANTHER:PTHR12696:SF0	PFAM:PF08623	ProteinID:CDY03047	ProteinID:CDY03047.1
SEG:seg	SUPFAM:SSF48371	UniParc:UPI0004EE07A9	MapMan:19.2.2.8.1.5	:	:

Description

BnaC07g21800D

Coordinates

chrLK031939:-:582348..589922

Molecular Weight (calculated)

135962.0 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.015

Length

1227 amino acids

Sequence
(BLAST)

0001: MANSQLSGII EKMTGKDKDY RYMATSDLLN ELNKDSFKLD SDLEMRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RVVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQVAPSLA PSILVTLTPQ MIGGISGQEM SPGIKCECLE IMCDVVQKYG SLMADDHEKL LNTLLLQLDC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV QVVKNLSNKN AKSEITRTNI QMIGAISRAV GYRFGTHLGN TVPVLINYCT SASENEEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DEMDEDTDNE TPEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMISKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESRQIFCTL SLHHPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV
0501: FTKLVLASHA PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTQSMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCVGLVISI
0601: FGDELRKELP SCLPVLVDRM GNEITRLTAV KAFAVIATSP LHIDLSCVLV NLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSDA YEVIVVELSS
0701: LISVLDLHMT ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLALQ GFFEALVYHA NTSFYTLLDS LLSCAKPSPQ SGGVPKQALY
0801: SIAQCVAVLC LAAGDKNCSS TVKMLMEILK DDSGSNTAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSSFEEIKSA ASYALGNIAV GNLPNYLPFI
0901: LNQIDNQQKK QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALKV RTTSQAAFTR ATVVTAVKYS
1001: VVERPEKLDE IIFPEISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL
1101: LDSCLDQLNP SSFIIPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLQK TINFKPKQDA VKQEHDRNED MIRSALRAIS SLDRISGVDY
1201: SHKFKSLMAD MKRSERLWGK YQTIRNE

Best Arabidopsis Sequence Match ( AT2G02560.2 )
(BLAST)

0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE

Arabidopsis Description

CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.