CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70553
CDX71533
CDX72295
CDX76416
CDX78568
CDX78656
CDX84902
CDX85608
CDX90556
CDX91076
CDY01192
CDY02426
CDY02834
CDY03047
CDY03208
CDY09359
CDY09730
CDY12145
CDY12369
CDY12734
CDY13413
CDY22374
CDY23283
CDY23617
CDY26433
CDY27125
CDY27634
CDY32686
CDY36454
CDY41685
CDY45206
CDY52540
CDY57060
CDY59253
CDY61016
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	CDX84902	AT1G19750.1	20622147
AT5G46210.1	CDY27634	AT1G19750.1	20622147
AT5G46210.1	CDY03047	AT2G02560.1	16844902
AT5G46210.1	CDY09359	AT2G02560.1	16844902
AT5G46210.1	CDY41685	AT2G02560.1	16844902
AT5G46210.1	CDY45206	AT2G02560.1	16844902
AT5G46210.1	CDY12145	AT2G32950.1	16844902
AT5G46210.1	CDY52540	AT2G32950.1	16844902
AT5G46210.1	CDY23617	AT3G13550.1	16844902
AT5G46210.1	CDY59253	AT3G13550.1	16844902
AT5G46210.1	CDY68484	AT4G05420.1	16792691
AT5G46210.1	CDY69266	AT4G05420.1	16792691
AT5G46210.1	CDY69930	AT4G05420.1	16792691
AT5G46210.1	CDY70585	AT4G05420.1	16792691
AT5G46210.1	CDY68484	AT4G05420.1	16844902
AT5G46210.1	CDY69266	AT4G05420.1	16844902
AT5G46210.1	CDY69930	AT4G05420.1	16844902
AT5G46210.1	CDY70585	AT4G05420.1	16844902
AT5G46210.1	CDY68484	AT4G05420.1	18223036
AT5G46210.1	CDY69266	AT4G05420.1	18223036
AT5G46210.1	CDY69930	AT4G05420.1	18223036
AT5G46210.1	CDY70585	AT4G05420.1	18223036
AT5G46210.1	CDY68484	AT4G05420.1	18551167
AT5G46210.1	CDY69266	AT4G05420.1	18551167
AT5G46210.1	CDY69930	AT4G05420.1	18551167
AT5G46210.1	CDY70585	AT4G05420.1	18551167
AT5G46210.1	CDY01192	AT4G14110.1	16844902
AT5G46210.1	CDY12369	AT4G14110.1	16844902
AT5G46210.1	CDY12734	AT4G14110.1	16844902
AT5G46210.1	CDY27125	AT4G14110.1	16844902
AT5G46210.1	CDX90556	AT4G15900.1	18223036
AT5G46210.1	CDY09730	AT4G15900.1	18223036
AT5G46210.1	CDX76416	AT4G21100.1	16792691
AT5G46210.1	CDY57060	AT4G21100.1	16792691
AT5G46210.1	CDX72295	AT4G31160.1	18552200
AT5G46210.1	CDY03208	AT4G31160.1	18552200
AT5G46210.1	CDY13413	AT4G31160.1	18552200
AT5G46210.1	CDY23283	AT4G31160.1	18552200
AT5G46210.1	CDY36454	AT4G31160.1	18552200
AT5G46210.1	CDX70553	AT5G14250.1	16844902
AT5G46210.1	CDX78568	AT5G14250.1	16844902
AT5G46210.1	CDX78656	AT5G14250.1	16844902
AT5G46210.1	CDX85608	AT5G14250.1	16844902
AT5G46210.1	CDX91076	AT5G14250.1	16844902
AT5G46210.1	CDY26433	AT5G14250.1	16844902
AT5G46210.1	CDX71533	AT5G42970.1	16844902
AT5G46210.1	CDY02426	AT5G42970.1	16844902
AT5G46210.1	CDY22374	AT5G42970.1	16844902
AT5G46210.1	CDY61016	AT5G42970.1	16844902
AT5G46210.1	CDY02834	AT5G58760.1	18551167
AT5G46210.1	CDY32686	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025031.1-P	Field mustard	cytosol	98.82	98.95
CDX77644	Canola	cytosol	98.29	97.52
KRH21073	Soybean	cytosol	35.35	94.06
CDY43957	Canola	cytosol	95.14	93.3
CDX87735	Canola	cytosol	94.88	92.56
CDY35152	Canola	plastid	95.27	92.24
CDY03235	Canola	plastid	95.53	92.03
AT5G46210.1	Thale cress	cytosol	91.06	87.5
KRH11182	Soybean	cytosol, plastid	84.49	81.6
KRH58640	Soybean	cytosol	83.05	81.55
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	83.97	81.4
KRH42547	Soybean	cytosol	82.13	81.27
VIT_10s0003g03710.t01	Wine grape	cytosol	85.41	81.05
TraesCS5A01G425300.1	Wheat	cytosol	74.64	79.89
GSMUA_Achr4P22850_001	Banana	cytosol	81.34	77.09
Solyc02g070460.2.1	Tomato	plastid	80.55	76.43
TraesCS5B01G427400.1	Wheat	cytosol	77.79	73.72
KRH21072	Soybean	plastid	45.99	72.46
EER93338	Sorghum	plastid	78.71	71.82
Zm00001d034361_P001	Maize	cytosol, plastid	78.32	71.63
TraesCS5D01G433700.3	Wheat	cytosol, plastid	77.79	71.33
HORVU5Hr1G103580.2	Barley	plastid	77.92	71.19
GSMUA_Achr7P01270_001	Banana	cytosol	80.95	70.4
Zm00001d013116_P002	Maize	plastid	78.45	69.42
CDY46437	Canola	cytosol	39.29	40.85
CDY45004	Canola	cytosol	39.16	40.71
CDY50732	Canola	cytosol	39.16	40.71
CDY16196	Canola	cytosol	39.16	40.71
CDY72590	Canola	cytosol	4.86	39.36
CDY51862	Canola	cytosol	13.14	34.6
CDX93643	Canola	cytosol	21.55	32.48
CDY22060	Canola	cytosol	31.27	32.25
CDY21896	Canola	cytosol	31.14	32.11
CDY18013	Canola	cytosol	31.14	32.11
CDX90932	Canola	cytosol	31.01	31.98
CDY32488	Canola	cytosol	30.09	31.03
CDX89925	Canola	cytosol	29.3	30.59
CDY51951	Canola	cytosol	28.91	29.85
CDX89926	Canola	cytosol	28.12	29.76
CDX67439	Canola	cytosol	27.07	29.3
CDY11663	Canola	cytosol	26.94	29.16
CDY51863	Canola	cytosol	11.7	20.6
CDX91291	Canola	nucleus	3.29	20.49
CDY21897	Canola	mitochondrion	6.7	20.0
CDY22061	Canola	mitochondrion	6.7	20.0
CDY18137	Canola	cytosol	27.99	14.52
CDY37452	Canola	cytosol	2.23	12.98

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	GO:A0A078H6G5
UniProt:A0A078H6G5	EnsemblPlants:CDY33461	ProteinID:CDY33461	ProteinID:CDY33461.1	InterPro:Cullin_CS	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
EnsemblPlantsGene:GSBRNA2T00054700001	InterPro:IPR016158	InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256
PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF27	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785
SUPFAM:SSF74788	SUPFAM:SSF75632	UniPathway:UPA00143	UniParc:UPI0004EF1C66	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaA06g36120DBnaA06g36120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6G5]

Coordinates

chrLK032315:-:32460..37626

Molecular Weight (calculated)

88033.3 Da

IEP (calculated)

8.096

GRAVY (calculated)

-0.437

Length

761 amino acids

Sequence
(BLAST)

001: MKKSKNGLHA PSSQPNASMD EDPAPSAAAN LSRKKATLPH PTKKLVIKLN KAKPSLPTNF EDTTWENLQS AIRAIFLKQP FPFDLERLYQ AVDDLCLHKL
101: EGKLYERIEK ECEEHISSAL QSLVGQDTDL SVFLSLVEKC WQDFCDQMLM IRSIALSLDR KYVIQHTNVR SLWEMGLQLF RKHLSLSPDV EQRTVTALLR
201: MIERERLAEA VNRTLLSHLL KMFTALGIYA ESFEKQFLEC TSEFYAAEGM KYMQQYDVPE YLKHVEGRLH EENERCILYI DASTRKPLIS AVEKQLLERH
301: IHAVLDKGFT PLMDGRRTED LQRMYTLFSR VSALESLRQA LSSYIRKTGQ KIVMDEEKDK DMVQSLLDFK ASLDIVWEES FCKNESFGNT IKDSFEHLIN
401: LRQNRPAELI AKFLDEKLRA GNKGTSEEEL ESTLEKVLVL FRFIQGKDVF EAFYKKDLAK RLLLGKSASI DAEKSMISKL KTECGSQFTN KLEGMFKDIE
501: LSKEINESFK QSSQARTKLP SGIEMSVHVL TTGYWPTYPH MDVKLPHELN VYQDIFKEFY LSKYSGRRLM WQNSLGHCVL KAGFSKGKKE LAVSLFQAVV
601: LMLFNDAMKL SFEDIKDSTG IEDKELRRTL QSLACGKVRV LQKYPKGRDV QDGDEFDFND TFTAPLYRIK VNAIQMKETV EENTSTTERV FQDRQYQIDA
701: AIVRIMKTRK VLSHTLLITE LFQQLKFPIK PADLKKRIES LIDREYLERD KSNPQIYNYL A

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.