CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72590	Canola	cytosol	16.44	88.3
Bra018706.1-P	Field mustard	cytosol	99.21	74.22
PGSC0003DMT400013645	Potato	cytosol	10.69	69.23
CDY18013	Canola	cytosol	71.68	49.05
CDX90932	Canola	cytosol	71.29	48.78
CDY22060	Canola	cytosol	71.09	48.65
CDY21896	Canola	cytosol	70.89	48.51
CDY11663	Canola	cytosol	67.13	48.22
CDX67439	Canola	cytosol	66.73	47.94
CDY51862	Canola	cytosol	26.93	47.06
CDX89926	Canola	cytosol	56.24	39.5
CDY51951	Canola	cytosol	57.62	39.48
CDY32488	Canola	cytosol	57.23	39.16
CDX91291	Canola	nucleus	9.31	38.52
CDX89925	Canola	cytosol	54.26	37.59
Solyc06g008710.1.1	Tomato	cytosol	50.3	34.19
CDY37452	Canola	cytosol	7.92	30.53
CDY51863	Canola	cytosol	22.97	26.85
CDY45004	Canola	cytosol	31.88	21.99
CDY46437	Canola	cytosol	31.88	21.99
CDY50732	Canola	cytosol	31.88	21.99
CDY16196	Canola	cytosol	31.88	21.99
CDY33461	Canola	cytosol	32.48	21.55
CDY43957	Canola	cytosol	32.48	21.13
CDX77644	Canola	cytosol	32.08	21.12
CDX87735	Canola	cytosol	32.48	21.03
CDY03235	Canola	plastid	32.48	20.76
CDY35152	Canola	plastid	32.28	20.74
CDY18137	Canola	cytosol	56.63	19.5
CDY22061	Canola	mitochondrion	7.72	15.29
CDY21897	Canola	mitochondrion	7.72	15.29

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:35.1	GO:A0A078E2C6	EnsemblPlants:CDX93643
ProteinID:CDX93643	ProteinID:CDX93643.1	InterPro:Cullin_CS	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	EnsemblPlantsGene:GSBRNA2T00156326001	InterPro:IPR016158
InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniPathway:UPA00143	UniParc:UPI0004EE6854	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

BnaA06g04050D

Coordinates

chrLK031876:+:1099495..1101601

Molecular Weight (calculated)

59279.1 Da

IEP (calculated)

6.824

GRAVY (calculated)

-0.494

Length

505 amino acids

Sequence
(BLAST)

001: MERKIIDFEQ GWEKIQIGIT ALKRKSECLH VPVLLAQHTI DIYTIVYRMC TQKSPNDFSW PLYQKYCETM EEHMNSTVLP ALSEKRGDEY MLLRELVERW
101: SNHKTFERYE EDFESFMLKD TASYYSCKAS SWIQEGSIDD YLLKFEECLK KEKERVTHYL HFSSEPNLVK VVEHEFFFVH ENQLLEKTHS EKQISFGSIA
201: KIFKQHVTEE GGEDNKATND QVASAKEQRW GSEELSDEDI EKVVTFLAYI SDEKYLFAEF YRKKLTLRLL LNRGVSDDHE RSILTKLKQQ HGGQFTYGEN
301: EIGLTVTLLT TGRKLTWIHS LGTCHVNGLF DQKPIELIVS THQAVVLLLF NTRDKLSYND IQTQLNVGHE DLVWLLHSLS CCKYKILTKE PATETVSRTD
401: VFEFNSKFTA RMCRIKIPLR HVDDRKKFIE NVDKDRRYAI DAAIVKIMKG RKALGHQQLV SECVGQLSRM FKPDIKAIKI RIDDLITRDY LERDMENPNM
501: FRYLA

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.