CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013645	Potato	cytosol	51.06	61.54
CDY51862	Canola	cytosol	62.77	20.42
CDX93643	Canola	cytosol	88.3	16.44
CDY22060	Canola	cytosol	74.47	9.49
CDY18013	Canola	cytosol	74.47	9.49
CDX90932	Canola	cytosol	73.4	9.35
CDY21896	Canola	cytosol	73.4	9.35
CDX67439	Canola	cytosol	68.09	9.1
CDY11663	Canola	cytosol	65.96	8.82
CDY51951	Canola	cytosol	68.09	8.68
CDY32488	Canola	cytosol	68.09	8.67
CDX89926	Canola	cytosol	62.77	8.21
Solyc06g008710.1.1	Tomato	cytosol	62.77	7.94
CDX89925	Canola	cytosol	57.45	7.41
CDY33461	Canola	cytosol	39.36	4.86
CDY43957	Canola	cytosol	39.36	4.77
CDX87735	Canola	cytosol	39.36	4.74
CDY35152	Canola	plastid	39.36	4.71
CDX77644	Canola	cytosol	38.3	4.69
CDY03235	Canola	plastid	39.36	4.68
CDY45004	Canola	cytosol	32.98	4.23
CDY46437	Canola	cytosol	32.98	4.23
CDY50732	Canola	cytosol	32.98	4.23
CDY16196	Canola	cytosol	32.98	4.23
CDY18137	Canola	cytosol	63.83	4.09
CDY22061	Canola	mitochondrion	8.51	3.14
CDY21897	Canola	mitochondrion	8.51	3.14
CDY51863	Canola	cytosol	6.38	1.39
CDY37452	Canola	cytosol	0.0	0.0
CDX91291	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	GO:A0A078K1F0	UniProt:A0A078K1F0	EnsemblPlants:CDY72590	ProteinID:CDY72590
ProteinID:CDY72590.1	InterPro:Cullin_CS	InterPro:Cullin_neddylation_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	EnsemblPlantsGene:GSBRNA2T00033701001
InterPro:IPR036388	PFAM:PF10557	ScanProsite:PS01256	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00884
SUPFAM:SSF46785	UniPathway:UPA00143	UniParc:UPI0004EDFF88	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:

Description

BnaCnng78460DBnaCnng78460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K1F0]

Coordinates

chrLK052043:+:397..681

Molecular Weight (calculated)

11041.6 Da

IEP (calculated)

9.822

GRAVY (calculated)

-0.514

Length

94 amino acids

Sequence
(BLAST)

1: MCRIKIPLRH VDDRKKFIEN VDKDSRYAID AAIVKIRKGK KALGHQQLVS DCAGKLSQMF KPDIKTIKIC IEDLITRDYL ERDMENPNMF RYLS

Best Arabidopsis Sequence Match ( AT4G02570.1 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.