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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70553
CDX71533
CDX72295
CDX76416
CDX78568
CDX78656
CDX84902
CDX85608
CDX90556
CDX91076
CDY01192
CDY02426
CDY02834
CDY03047
CDY03208
CDY09359
CDY09730
CDY12145
CDY12369
CDY12734
CDY13413
CDY22374
CDY23283
CDY23617
CDY26433
CDY27125
CDY27634
CDY32686
CDY36454
CDY41685
CDY45206
CDY52540
CDY57060
CDY59253
CDY61016
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46210.1 CDX84902 AT1G19750.1 20622147
AT5G46210.1 CDY27634 AT1G19750.1 20622147
AT5G46210.1 CDY03047 AT2G02560.1 16844902
AT5G46210.1 CDY09359 AT2G02560.1 16844902
AT5G46210.1 CDY41685 AT2G02560.1 16844902
AT5G46210.1 CDY45206 AT2G02560.1 16844902
AT5G46210.1 CDY12145 AT2G32950.1 16844902
AT5G46210.1 CDY52540 AT2G32950.1 16844902
AT5G46210.1 CDY23617 AT3G13550.1 16844902
AT5G46210.1 CDY59253 AT3G13550.1 16844902
AT5G46210.1 CDY68484 AT4G05420.1 16792691
AT5G46210.1 CDY69266 AT4G05420.1 16792691
AT5G46210.1 CDY69930 AT4G05420.1 16792691
AT5G46210.1 CDY70585 AT4G05420.1 16792691
AT5G46210.1 CDY68484 AT4G05420.1 16844902
AT5G46210.1 CDY69266 AT4G05420.1 16844902
AT5G46210.1 CDY69930 AT4G05420.1 16844902
AT5G46210.1 CDY70585 AT4G05420.1 16844902
AT5G46210.1 CDY68484 AT4G05420.1 18223036
AT5G46210.1 CDY69266 AT4G05420.1 18223036
AT5G46210.1 CDY69930 AT4G05420.1 18223036
AT5G46210.1 CDY70585 AT4G05420.1 18223036
AT5G46210.1 CDY68484 AT4G05420.1 18551167
AT5G46210.1 CDY69266 AT4G05420.1 18551167
AT5G46210.1 CDY69930 AT4G05420.1 18551167
AT5G46210.1 CDY70585 AT4G05420.1 18551167
AT5G46210.1 CDY01192 AT4G14110.1 16844902
AT5G46210.1 CDY12369 AT4G14110.1 16844902
AT5G46210.1 CDY12734 AT4G14110.1 16844902
AT5G46210.1 CDY27125 AT4G14110.1 16844902
AT5G46210.1 CDX90556 AT4G15900.1 18223036
AT5G46210.1 CDY09730 AT4G15900.1 18223036
AT5G46210.1 CDX76416 AT4G21100.1 16792691
AT5G46210.1 CDY57060 AT4G21100.1 16792691
AT5G46210.1 CDX72295 AT4G31160.1 18552200
AT5G46210.1 CDY03208 AT4G31160.1 18552200
AT5G46210.1 CDY13413 AT4G31160.1 18552200
AT5G46210.1 CDY23283 AT4G31160.1 18552200
AT5G46210.1 CDY36454 AT4G31160.1 18552200
AT5G46210.1 CDX70553 AT5G14250.1 16844902
AT5G46210.1 CDX78568 AT5G14250.1 16844902
AT5G46210.1 CDX78656 AT5G14250.1 16844902
AT5G46210.1 CDX85608 AT5G14250.1 16844902
AT5G46210.1 CDX91076 AT5G14250.1 16844902
AT5G46210.1 CDY26433 AT5G14250.1 16844902
AT5G46210.1 CDX71533 AT5G42970.1 16844902
AT5G46210.1 CDY02426 AT5G42970.1 16844902
AT5G46210.1 CDY22374 AT5G42970.1 16844902
AT5G46210.1 CDY61016 AT5G42970.1 16844902
AT5G46210.1 CDY02834 AT5G58760.1 18551167
AT5G46210.1 CDY32686 AT5G58760.1 18551167
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87735 Canola cytosol 99.74 99.23
Bra022023.1-P Field mustard plastid 98.97 97.83
CDY33461 Canola cytosol 93.3 95.14
CDX77644 Canola cytosol 93.3 94.39
CDY03235 Canola plastid 95.62 93.92
KRH21073 Soybean cytosol 34.41 93.36
CDY35152 Canola plastid 94.46 93.26
AT5G46210.1 Thale cress cytosol 91.11 89.27
KRH11182 Soybean cytosol, plastid 83.63 82.36
Solyc02g021470.2.1 Tomato cytosol, nucleus, plastid 82.35 81.4
KRH58640 Soybean cytosol 81.19 81.29
KRH42547 Soybean cytosol 80.54 81.27
VIT_10s0003g03710.t01 Wine grape cytosol 83.63 80.92
TraesCS5A01G425300.1 Wheat cytosol 72.68 79.32
GSMUA_Achr4P22850_001 Banana cytosol 80.15 77.46
Solyc02g070460.2.1 Tomato plastid 79.64 77.06
KRH21072 Soybean plastid 46.13 74.12
TraesCS5B01G427400.1 Wheat cytosol 75.9 73.35
EER93338 Sorghum plastid 78.09 72.66
Zm00001d034361_P001 Maize cytosol, plastid 77.84 72.6
TraesCS5D01G433700.3 Wheat cytosol, plastid 76.8 71.81
HORVU5Hr1G103580.2 Barley plastid 76.8 71.55
GSMUA_Achr7P01270_001 Banana cytosol 80.03 70.97
Zm00001d013116_P002 Maize plastid 77.84 70.23
CDY46437 Canola cytosol 38.53 40.85
CDY45004 Canola cytosol 38.4 40.71
CDY16196 Canola cytosol 38.27 40.57
CDY50732 Canola cytosol 38.27 40.57
CDY72590 Canola cytosol 4.77 39.36
CDY51862 Canola cytosol 13.02 34.95
CDY22060 Canola cytosol 30.93 32.52
CDX93643 Canola cytosol 21.13 32.48
CDY21896 Canola cytosol 30.8 32.38
CDY18013 Canola cytosol 30.8 32.38
CDX90932 Canola cytosol 30.67 32.25
CDY32488 Canola cytosol 29.9 31.44
CDX89925 Canola cytosol 29.12 31.0
CDX89926 Canola cytosol 28.09 30.32
CDY51951 Canola cytosol 28.74 30.26
CDX67439 Canola cytosol 26.55 29.3
CDY11663 Canola cytosol 26.16 28.88
CDY51863 Canola cytosol 11.86 21.3
CDX91291 Canola nucleus 3.09 19.67
CDY21897 Canola mitochondrion 6.31 19.22
CDY22061 Canola mitochondrion 6.31 19.22
CDY18137 Canola cytosol 27.84 14.72
CDY37452 Canola cytosol 2.45 14.5
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.10.2620Gene3D:1.20.1310.10MapMan:19.2.2.8.3.1MapMan:26.1.1.3.1GO:A0A078I1J3
UniProt:A0A078I1J3EnsemblPlants:CDY43957ProteinID:CDY43957ProteinID:CDY43957.1InterPro:Cullin_CSInterPro:Cullin_N
InterPro:Cullin_homologyInterPro:Cullin_homology_sfInterPro:Cullin_neddylation_domainInterPro:Cullin_repeat-like_dom_sfGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006511GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0019538GO:GO:0031461GO:GO:0031625
EnsemblPlantsGene:GSBRNA2T00079339001InterPro:IPR016158InterPro:IPR036388PFAM:PF00888PFAM:PF10557ScanProsite:PS01256
PFscan:PS50069PANTHER:PTHR11932PANTHER:PTHR11932:SF27SMART:SM00182SMART:SM00884SUPFAM:SSF46785
SUPFAM:SSF74788SUPFAM:SSF75632UniPathway:UPA00143UniParc:UPI0004EDF931InterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sf
SEG:seg:::::
Description
BnaA02g24350DBnaA02g24350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1J3]
Coordinates
chrLK032575:-:25647..30689
Molecular Weight (calculated)
89919.7 Da
IEP (calculated)
8.052
GRAVY (calculated)
-0.451
Length
776 amino acids
Sequence
(BLAST)
001: MSLPTKRSTC PPMKKAKNGL HTPSADKVGF PMEEEDEDPT PSAANLSRKK ATLPQPSKKL VIKLNKAKPS LPTNFEDTTW DNLQSAIRAI FLKHPFPFDL
101: ERLYQAVDNL CLHKLEGKLY KRIEKECEEH ISVALQSLVG QDTDLSVFLS LVEKCWQDFC DQMLMIRSIA LSLDRKYVIQ NPNIRSLWEM GLQLFRKHLS
201: LSPDVEQRTV TALLRMIEKE RLAEAVNRTL LSHLLKMFTA LGIYTESFEK HFLECTSEFY AAEGMKYMQQ YDVPEYLKHV EGRLHEENER CILYIDPSTR
301: KPLISTIENQ LLERHTVAIL DKGFTPLMDG RRTEDLQRMY TLFSRVNALE SLRQALSSYI RKTGQKIVMD EEKDKDMVQS LLDFKASLDI VWEESFCKNE
401: SFGNTIKDSF EHLINLRQNR PAELIAKFLD EKLRAGNKGT SEEELESTLE KVLVLFRFIQ GKDVFEAFYK KDLAKRLLLG KSASIDAEKS MISKLKTECG
501: SQFTNKLEGM FKDIELSKEI NESFKQSSQA RTKLPSGIEM SVHVLTTGYW PTYPPMDVKL PHELNVYQDI FKEFYLSKYS GRRLMWQNSL GHCVLKADFT
601: KAKKELAVSL FQAVVLMLFN DAMKLSFEDI KDSTGIEDKE LRRTLQSLAC GKVRILHKYP KGRDVQDGDE FDFNDTFTAP LYRIKVNAIQ MKETVEENTS
701: TTERVFQDRQ YQIDAAIVRI MKTRKVLSHT LLITELFQQL KFPIKPADLK KRIESLIDRE YLERDKSNPQ IYNYLA
Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)
001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA
Arabidopsis Description
CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.