Factsheet for GSMUA_Achr7P01270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P22370_001
GSMUA_Achr4P22180_001
GSMUA_Achr6P19320_001
GSMUA_Achr7P23160_001
GSMUA_Achr8P07200_001
GSMUA_Achr8P10190_001
GSMUA_Achr8P10200_001
GSMUA_Achr8P10210_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	GSMUA_Achr6P19320_001	AT1G19750.1	20622147
AT5G46210.1	GSMUA_Achr10P...	AT1G71230.1	16844902
AT5G46210.1	GSMUA_Achr10P...	AT2G02560.1	16844902
AT5G46210.1	GSMUA_Achr3P20130_001	AT2G32950.1	16844902
AT5G46210.1	GSMUA_AchrUn_...	AT2G32950.1	16844902
AT5G46210.1	GSMUA_Achr4P22180_001	AT3G13550.1	16844902
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	16792691
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	16844902
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	18223036
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	18551167
AT5G46210.1	GSMUA_Achr2P20500_001	AT4G14110.1	16844902
AT5G46210.1	GSMUA_Achr11P...	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P10190_001	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P10200_001	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P10210_001	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G21100.1	16792691
AT5G46210.1	GSMUA_Achr3P22370_001	AT4G31160.1	18552200
AT5G46210.1	GSMUA_Achr7P23160_001	AT4G31160.1	18552200
AT5G46210.1	GSMUA_Achr11P...	AT5G14250.1	16844902
AT5G46210.1	GSMUA_AchrUn_...	AT5G14250.1	16844902
AT5G46210.1	GSMUA_Achr8P31220_001	AT5G42970.1	16844902
AT5G46210.1	GSMUA_Achr9P19410_001	AT5G42970.1	16844902
AT5G46210.1	GSMUA_Achr11P...	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21073	Soybean	cytosol	30.17	92.31
GSMUA_Achr4P22850_001	Banana	cytosol	84.69	92.28
TraesCS5A01G425300.1	Wheat	cytosol	68.8	84.67
VIT_10s0003g03710.t01	Wine grape	cytosol	77.26	84.29
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	74.51	83.06
KRH11182	Soybean	cytosol, plastid	74.29	82.49
KRH58640	Soybean	cytosol	72.46	81.81
KRH42547	Soybean	cytosol	71.66	81.53
CDY33461	Canola	cytosol	70.4	80.95
Bra025031.1-P	Field mustard	cytosol	70.17	80.79
CDX77644	Canola	cytosol	70.29	80.18
CDY43957	Canola	cytosol	70.97	80.03
TraesCS5B01G427400.1	Wheat	cytosol	73.37	79.95
Bra022023.1-P	Field mustard	plastid	71.54	79.75
CDX87735	Canola	cytosol	71.09	79.74
CDY35152	Canola	plastid	70.97	79.01
Bra017569.1-P	Field mustard	plastid	70.86	78.88
EER93338	Sorghum	plastid	75.09	78.78
CDY03235	Canola	plastid	71.09	78.73
Zm00001d034361_P001	Maize	cytosol, plastid	74.74	78.61
AT5G46210.1	Thale cress	cytosol	70.74	78.16
TraesCS5D01G433700.3	Wheat	cytosol, plastid	74.06	78.07
HORVU5Hr1G103580.2	Barley	plastid	74.17	77.91
Solyc02g070460.2.1	Tomato	plastid	71.2	77.68
Zm00001d013116_P002	Maize	plastid	74.74	76.05
KRH21072	Soybean	plastid	41.6	75.36
GSMUA_AchrUn_...	Banana	cytosol	32.69	40.4
GSMUA_Achr8P16990_001	Banana	cytosol	32.46	40.11
GSMUA_AchrUn_...	Banana	cytosol	27.2	40.0
GSMUA_Achr7P18000_001	Banana	cytosol	32.34	39.97
GSMUA_Achr2P07360_001	Banana	mitochondrion	15.89	35.92
GSMUA_AchrUn_...	Banana	cytosol	26.97	32.46
GSMUA_Achr7P03700_001	Banana	cytosol	27.43	32.26
GSMUA_Achr1P14740_001	Banana	cytosol	27.43	32.26
GSMUA_Achr9P17620_001	Banana	cytosol	26.51	31.48
GSMUA_Achr1P26690_001	Banana	cytosol	26.29	30.87

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	InterPro:Cullin_CS
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	EnsemblPlantsGene:GSMUA_Achr7G01270_001	EnsemblPlants:GSMUA_Achr7P01270_001	EnsemblPlants:GSMUA_Achr7T01270_001	InterPro:IPR016158	InterPro:IPR036388
UniProt:M0TDR7	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF27	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI00029652F5	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

Cullin-4 [Source:GMGC_GENE;Acc:GSMUA_Achr7G01270_001]

Coordinates

chr7:+:976049..988471

Molecular Weight (calculated)

99531.0 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.354

Length

875 amino acids

Sequence
(BLAST)

001: MTQHKRPFSC SRSGGGGGDG GTTTTNSNSS GASGGSTLLS PDSSSSMKKA KPLPAAACSL EKEKNGLHHH FDTAAAAAAV AARPGKEEDA MLVDQEELKP
101: GASVPVAMTG VAANLSRKKA TPPQPSAKKQ LVIKFVKGKP SVPANFEEDT WATLKSAINA IFLKRRDPCD SEKLYQAVDD LCLHKMGGNL YQRVQRECEI
201: HISRALSSLV GQSPDLVVFL SLVEKCWQDF CDQMLTIRGI ALVLDRTYVK QTPNVRSLWD MGLQLFRKHL ALSSEVEHKV VTGLLRLIEK ERQGEAIDKT
301: VLSHLLKMFT ALGIYMESFE KLFLECTSEF YAAEGVKYMQ QSDVPDYLKH VESRLHEENE RCFLYLDVNT RKPLVATAEK QLLERHTSAI LDKGFTMLME
401: ANRVDDLQRM YTLFQRVNAL ELIRQALSSY IRGTGQVIIM DEEKDKDLVS FLLEFKASLD KILEESFFKN EAFSNTIKDS FEHLINLRQN AFCVDYKSKV
501: SKLWSNFFST CFCEFFGNRP AELIAKFVDE KLRAGNKGTS EEELESMLDK VLVLFRFIQG KDVFEAFYKK DLAKRLLLGK SASIDAEKSM ITKLKTECGS
601: QFTNKLEGMF KDIELSKEIN DSFKQSSQAR TKLPTGIEMS VHVLTTGYWP TYPPMDVRLP HELNVYQDIF KEFYLSKYHG RRLMWQSSLG HCVLKAEFPR
701: GKKELSVSLF QAVVLMLFND TQRLSLQDIK DSTGIDDREL RRTLQSLACG KVRVLQKIPK GREIEDEDSF VFNEEFTAPL YRIKVNAIQM KETVEENTST
801: TERVFQDRQY QVDAAIVRIM KTRKVLSHTL LITELFQQLK FPIKPVDLKK RIESLIDREY LDRDKNNPQI YNYLA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.