Factsheet for GSMUA_Achr2P07360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	66.15	43.03
GSMUA_Achr7P18000_001	Banana	cytosol	63.57	34.75
GSMUA_Achr8P16990_001	Banana	cytosol	62.79	34.32
GSMUA_AchrUn_...	Banana	cytosol	62.79	34.32
GSMUA_AchrUn_...	Banana	cytosol	33.85	18.02
GSMUA_Achr1P26690_001	Banana	cytosol	34.37	17.85
GSMUA_Achr7P03700_001	Banana	cytosol	34.11	17.74
GSMUA_Achr4P22850_001	Banana	cytosol	35.92	17.31
GSMUA_Achr1P14740_001	Banana	cytosol	33.07	17.2
GSMUA_Achr9P17620_001	Banana	cytosol	32.3	16.96
GSMUA_Achr7P01270_001	Banana	cytosol	35.92	15.89
AT1G59800.1	Thale cress	cytosol	0.26	0.39
VIT_05s0020g01340.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	Gene3D:1.20.58.2160	MapMan:35.1	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031625	EnsemblPlantsGene:GSMUA_Achr2G07360_001	EnsemblPlants:GSMUA_Achr2P07360_001	EnsemblPlants:GSMUA_Achr2T07360_001	InterPro:IPR016158
InterPro:IPR036388	UniProt:M0S5X7	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI000295D984	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

Cullin-3A [Source:GMGC_GENE;Acc:GSMUA_Achr2G07360_001]

Coordinates

chr2:-:11872133..11873554

Molecular Weight (calculated)

43544.3 Da

IEP (calculated)

6.249

GRAVY (calculated)

-0.298

Length

387 amino acids

Sequence
(BLAST)

001: MIAKHMRRLV HMDSGLVSML LRDEYEDLGR MYSLLRRCTG GVSTIRDLMT SHLRETGKQL VTDAASSRNP VDLGDGGKDV EIVLHKAMTL FRYLQEKDVF
101: EKYHKQNLAN RLLSGRAVSD DAERSLIVKL RVECGHNYTS KLEEMLTDVK FSQDIMRGFY ASQGVDEEAG EGPTLAAQVL TGAIWPSRPS TACKLPDEIH
201: DVCEKFRAYY LGSHACRKLT WQTDLGTADV VATFGNGQKH ELNVSTSQMC VLVLFNSADR LSCKDIQQAT AMPLPDLKRC LWSLACVPDM NVLCKNPTNN
301: VIAEDDVFCV NDNFTSNLFQ VKIDTAAAEE EVMKAQRVLN LNSLVTEVAK QLQPRVLPDP AVIKKRVESL IEREYLEDNK NQYQYIA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.