Factsheet for GSMUA_Achr4P22850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr3P20130_001
GSMUA_Achr3P22370_001
GSMUA_Achr4P22180_001
GSMUA_Achr6P19320_001
GSMUA_Achr7P23160_001
GSMUA_Achr8P07200_001
GSMUA_Achr8P10190_001
GSMUA_Achr8P10200_001
GSMUA_Achr8P10210_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	GSMUA_Achr6P19320_001	AT1G19750.1	20622147
AT5G46210.1	GSMUA_Achr10P...	AT1G71230.1	16844902
AT5G46210.1	GSMUA_Achr10P...	AT2G02560.1	16844902
AT5G46210.1	GSMUA_Achr3P20130_001	AT2G32950.1	16844902
AT5G46210.1	GSMUA_AchrUn_...	AT2G32950.1	16844902
AT5G46210.1	GSMUA_Achr4P22180_001	AT3G13550.1	16844902
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	16792691
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	16844902
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	18223036
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G05420.1	18551167
AT5G46210.1	GSMUA_Achr2P20500_001	AT4G14110.1	16844902
AT5G46210.1	GSMUA_Achr11P...	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P10190_001	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P10200_001	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P10210_001	AT4G15900.1	18223036
AT5G46210.1	GSMUA_Achr8P07200_001	AT4G21100.1	16792691
AT5G46210.1	GSMUA_Achr3P22370_001	AT4G31160.1	18552200
AT5G46210.1	GSMUA_Achr7P23160_001	AT4G31160.1	18552200
AT5G46210.1	GSMUA_Achr11P...	AT5G14250.1	16844902
AT5G46210.1	GSMUA_AchrUn_...	AT5G14250.1	16844902
AT5G46210.1	GSMUA_Achr8P31220_001	AT5G42970.1	16844902
AT5G46210.1	GSMUA_Achr9P19410_001	AT5G42970.1	16844902
AT5G46210.1	GSMUA_Achr11P...	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21073	Soybean	cytosol	33.75	94.76
TraesCS5A01G425300.1	Wheat	cytosol	75.84	85.65
VIT_10s0003g03710.t01	Wine grape	cytosol	85.31	85.41
GSMUA_Achr7P01270_001	Banana	cytosol	92.28	84.69
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	81.94	83.82
KRH11182	Soybean	cytosol, plastid	81.2	82.74
KRH58640	Soybean	cytosol	79.58	82.45
KRH42547	Soybean	cytosol	78.33	81.79
CDY33461	Canola	cytosol	77.09	81.34
Bra025031.1-P	Field mustard	cytosol	76.96	81.32
CDX77644	Canola	cytosol	77.09	80.7
TraesCS5B01G427400.1	Wheat	cytosol	80.32	80.32
CDY43957	Canola	cytosol	77.46	80.15
CDX87735	Canola	cytosol	77.33	79.62
Bra022023.1-P	Field mustard	plastid	77.71	79.49
EER93338	Sorghum	plastid	81.82	78.78
Zm00001d034361_P001	Maize	cytosol, plastid	81.44	78.61
CDY35152	Canola	plastid	76.84	78.5
Bra017569.1-P	Field mustard	plastid	76.71	78.37
CDY03235	Canola	plastid	76.96	78.23
TraesCS5D01G433700.3	Wheat	cytosol, plastid	80.57	77.95
Solyc02g070460.2.1	Tomato	plastid	77.83	77.93
HORVU5Hr1G103580.2	Barley	plastid	80.45	77.55
AT5G46210.1	Thale cress	cytosol	76.09	77.15
Zm00001d013116_P002	Maize	plastid	81.07	75.7
KRH21072	Soybean	plastid	44.58	74.12
GSMUA_Achr8P16990_001	Banana	cytosol	35.99	40.82
GSMUA_AchrUn_...	Banana	cytosol	35.87	40.68
GSMUA_Achr7P18000_001	Banana	cytosol	35.74	40.54
GSMUA_AchrUn_...	Banana	cytosol	29.64	40.0
GSMUA_Achr2P07360_001	Banana	mitochondrion	17.31	35.92
GSMUA_AchrUn_...	Banana	cytosol	29.76	32.87
GSMUA_Achr7P03700_001	Banana	cytosol	30.14	32.53
GSMUA_Achr1P14740_001	Banana	cytosol	29.89	32.26
GSMUA_Achr1P26690_001	Banana	cytosol	28.89	31.14
GSMUA_Achr9P17620_001	Banana	cytosol	28.27	30.8

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	InterPro:Cullin_CS
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	EnsemblPlantsGene:GSMUA_Achr4G22850_001	EnsemblPlants:GSMUA_Achr4P22850_001	EnsemblPlants:GSMUA_Achr4T22850_001	InterPro:IPR016158	InterPro:IPR036388
UniProt:M0SR97	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF27	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI000295C93B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

Cullin-4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G22850_001]

Coordinates

chr4:-:23116607..23130725

Molecular Weight (calculated)

92038.2 Da

IEP (calculated)

7.599

GRAVY (calculated)

-0.383

Length

803 amino acids

Sequence
(BLAST)

001: MKKAKPQLAA TCSLEKEKNG LHPQPHHSNT TAAAAVAAQS GEEDDAMLVD QEELKPGASA PVMVTGVAAN LSRKKATPPQ PSVKKQLVIK LVKGKPSLPK
101: NFEEDTWATL KSAITAIFLK QPDPCDSEKL YQAVSDLCLH KMGGNLYQRI QKECETHISS TMSSLVGQSP DLVVFLSLVE KCWQDFCDQM LTIRGIALVL
201: DRTFVKQTPN IHSLWDMGLQ LFRKHLALSP EVEHKVVTGL LRLIEKERQG EAIDRTVLSH LLKMFTALGI YTESFEKPFL VCTSEFYAAE GVKYMQQSDV
301: PDYLRHVESR LHEEHERCLL YLDASTRKPL VATAEKQLLE RHTSAILDKG FTMLMEANRV DDLQRMYTLF QRVDALELIR QALSSYIRGT GQVIIMDEEK
401: DKDLVPYLLE FKASLDKIWE ESFFRNEAFS NTIKDSFEHL INLRQNRPAE LIAKYVDEKL RAGNKGTSEE ELESILDRVL VLFRFIQGKD VFEAFYKKDL
501: AKRLLLGKSA SIDAEKSMIT KLKTECGSQF TNKLEGMFKD IELSKEINDS FKQSSQARTK LPTGIEMSVH VLTTGYWPTY PPMDVRLPHE LNVYQDIFKE
601: FYLSKYHGRR LMWQNSLGHC VLKAEFPKGK KELSVSLFQT VVLMLFNDTQ KLSFQDIKDS TGIDDKELRR TLQSLACGKV RVLQKIPKGR EIEDDDSFVF
701: NEEFSAPLYR LKVNAIQMKE TVEENTSTTE RVFQDRQYQV DAAIVRIMKT RKVLSHTLLI TELFQQLKFP IKPADLKKRI ESLIDREYLE RDKNNPQIYN
801: YLA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.