Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 83.18 | 85.61 |
| Os08t0119000-01 | Rice | cytosol | 72.04 | 71.36 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 70.38 | 70.05 |
| Solyc02g093920.2.1 | Tomato | cytosol | 69.19 | 68.22 |
| PGSC0003DMT400052100 | Potato | cytosol | 69.19 | 68.22 |
| EES13281 | Sorghum | cytosol | 68.96 | 67.83 |
| KRH57651 | Soybean | cytosol | 67.54 | 67.38 |
| KRG94317 | Soybean | cytosol | 67.3 | 67.14 |
| Zm00001d049652_P001 | Maize | cytosol | 67.3 | 66.82 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 65.88 | 65.11 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 65.64 | 64.87 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 63.03 | 62.59 |
| Zm00001d035130_P001 | Maize | cytosol | 68.01 | 61.59 |
| CDX78568 | Canola | cytosol | 58.29 | 58.43 |
| Bra006246.1-P | Field mustard | cytosol | 57.82 | 57.96 |
| AT5G14250.1 | Thale cress | cytosol | 58.29 | 57.34 |
| CDX85608 | Canola | cytosol | 57.58 | 57.18 |
| Bra023453.1-P | Field mustard | cytosol | 57.58 | 57.18 |
| CDX91076 | Canola | cytosol | 57.58 | 57.04 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 64.93 | 56.26 |
| Zm00001d028517_P001 | Maize | cytosol | 13.98 | 53.64 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 29.38 | 49.6 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 28.91 | 48.61 |
| CDX70553 | Canola | mitochondrion | 40.05 | 46.3 |
| CDY26433 | Canola | mitochondrion | 31.52 | 30.23 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | InterPro:CSN3 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008180 | EnsemblPlantsGene:GSMUA_Achr11G15020_001 | EnsemblPlants:GSMUA_Achr11P15020_001 | EnsemblPlants:GSMUA_Achr11T15020_001 | InterPro:IPR000717 |
| UniProt:M0RSD2 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI00029537A2 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
COP9 signalosome complex subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G15020_001]
Coordinates
chr11:-:16586799..16601752
Molecular Weight (calculated)
47614.4 Da
IEP (calculated)
6.230
GRAVY (calculated)
-0.118
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVEAVVAH IQGLSGSQEE VAHLHSLLKQ SEDALRSQAA RLGAFLHQLD PSVHTLGYLF LLEAYSSDPV CREQDGDFLL SIVEFINSCS AEQIRLAPEK
101: FISVCKSFKD KVMQLQVPIQ GIVPLRTAIR KLQASSEQLT TLHSDYLLLC LLAKCYKAGL SILDDDIFEV DQPRDLFLYC YYGGMINIGL KHYRKAWECL
201: HNVITAPMTT LNAIAVEAYK KYILVSIILS GQVPLFPKYT SSTAQRNLKS HTQPYVDLAN CYATGTFSEL EGCIQTNLEK FQSDSNLGLV KQVLSSLYKR
301: NIQRLTQTYL TLSLQDIANA AQLKTPREAE MHVLQMIQDG EIFATINQKD GMVSFHEDPE QYKTCGMIEH IDSSIHRLMA LSKKLGSLDE HMSCDPAYLT
401: RIGKERPRFD FDEFDSVPHK FL
101: FISVCKSFKD KVMQLQVPIQ GIVPLRTAIR KLQASSEQLT TLHSDYLLLC LLAKCYKAGL SILDDDIFEV DQPRDLFLYC YYGGMINIGL KHYRKAWECL
201: HNVITAPMTT LNAIAVEAYK KYILVSIILS GQVPLFPKYT SSTAQRNLKS HTQPYVDLAN CYATGTFSEL EGCIQTNLEK FQSDSNLGLV KQVLSSLYKR
301: NIQRLTQTYL TLSLQDIANA AQLKTPREAE MHVLQMIQDG EIFATINQKD GMVSFHEDPE QYKTCGMIEH IDSSIHRLMA LSKKLGSLDE HMSCDPAYLT
401: RIGKERPRFD FDEFDSVPHK FL
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.